PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.018G124500.1 | ||||||||
Common Name | POPTR_0025s00720g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | B3 | ||||||||
Protein Properties | Length: 183aa MW: 21084 Da PI: 9.3082 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 55.7 | 9.1e-18 | 27 | 110 | 9 | 97 |
HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 d ++ ++p+kf++++g++ sk tled++g W+++l + +g++ ++kGW++F++ Lk gD +vF+++g+s+f v+++ Potri.018G124500.1 27 DDIPENKPWIPRKFLRKIGNV--LSKSATLEDPNGTLWRIEL-LKSADGMVRFQKGWQDFADFYSLKKGDLLVFEYKGNSRF--SVSIY 110 555566789*********988..8999***************.5666677****************************9999..77665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 7.06E-23 | 15 | 111 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.8E-21 | 19 | 112 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 14.395 | 19 | 113 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 7.00E-18 | 20 | 111 | No hit | No description |
SMART | SM01019 | 9.1E-11 | 21 | 113 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.5E-15 | 26 | 110 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
MGFSRERERD GSLFKPGEYR FIKRIHDDIP ENKPWIPRKF LRKIGNVLSK SATLEDPNGT 60 LWRIELLKSA DGMVRFQKGW QDFADFYSLK KGDLLVFEYK GNSRFSVSIY KEMDCPAGSI 120 DSVSSNQFGH FEEDMEDEDY LEFLAKLPKQ KPEVSYSFSK PASDSPSCMI IKSGRSRKRL 180 KS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.018G124500.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006389440.2 | 1e-131 | B3 domain-containing transcription factor VRN1 | ||||
TrEMBL | A0A2K1WZX8 | 1e-130 | A0A2K1WZX8_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0025s00720.1 | 1e-129 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP1718 | 5 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 4e-20 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.018G124500.1 |
Entrez Gene | 18111088 |