PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.018G123900.1
Common NamePOPTR_0025s00660g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 304aa    MW: 33259.1 Da    PI: 9.1975
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.018G123900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.00028117139123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C+ C + Fs++  L  H++ H
  Potri.018G123900.1 117 FSCSFCRRKFSTSQALGGHQNAH 139
                         89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.9E-4112143IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.21E-6113144No hitNo description
PROSITE profilePS5015711.552117144IPR007087Zinc finger, C2H2
PROSITE patternPS000280119139IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MIDLSFILSM DSIVPEWCPS KASSISAAAS GGEPHKDCGD HDQNMKMKER VVRGSEPPPF  60
PKSSACGLLD LKPHSDDSIR GSKLEFNLFS PINVGYSSHA KESMDEASKQ STEPRVFSCS  120
FCRRKFSTSQ ALGGHQNAHK QERALAKKRE GSDVGATLGQ FPYNPYSSLP TNQYYGSFNR  180
LVGVRMDSLI HKKQPYPWNS FGGYRHGHGG WSRQVLVSTQ PSVDRLRAES SKAFSGVPFG  240
NFSSPSSSSR FEDHNGLFRN PCASPSSNIA FNMPPSTDHL QRPNRPPKSD QTDGSGLDLS  300
LKL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.018G123900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006389433.20.0zinc finger protein 3
TrEMBLU7E1E10.0U7E1E1_POPTR; Zinc finger family protein
STRINGPOPTR_0025s00660.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18223074
Representative plantOGRP8215137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25160.11e-21zinc finger protein 3