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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.018G123800.1 | ||||||||
Common Name | POPTR_0025s00650g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | C2H2 | ||||||||
Protein Properties | Length: 295aa MW: 31832.1 Da PI: 9.3308 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.8 | 0.00018 | 109 | 131 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ Fs++ L H++ H Potri.018G123800.1 109 FSCNFCKREFSTSQALGGHQNAH 131 89******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 1.8E-4 | 103 | 135 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.55E-6 | 105 | 136 | No hit | No description |
PROSITE profile | PS50157 | 11.531 | 109 | 136 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 111 | 131 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 295 aa Download sequence Send to blast |
MESSGTEKSP SEGSSISATS EGTPHGDGGD LDQTKMDSTK KMKEKAARGS EPALLPESSA 60 RVLLGLKLSS DSSIRGSKQF NLFSPMSAGS SHAKESTDET SRQTESRVFS CNFCKREFST 120 SQALGGHQNA HKQERALAKR RREMDASALG HLPYYPYSSL STNPYYGSLN RALGVRMDSF 180 IHKTSPYSWT SPGGHRYGAH SGWPRQTLMN TQPSIDRLRT ESLNAFCGGF GISTSSSSPR 240 FDDNGIVRSS FGASPSSNNI TAIRKPPVTD HIQQINPPKS DQTDESGLDL SLKL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.018G123800.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006389432.1 | 0.0 | uncharacterized protein LOC18111080 | ||||
TrEMBL | U7E2Y1 | 0.0 | U7E2Y1_POPTR; Zinc finger family protein | ||||
STRING | POPTR_0025s00650.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1822 | 30 | 74 | Representative plant | OGRP82 | 15 | 137 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25160.1 | 2e-23 | zinc finger protein 3 |
Link Out ? help Back to Top | |
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Phytozome | Potri.018G123800.1 |
Entrez Gene | 18111080 |