PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.018G107000.6 | ||||||||
Common Name | POPTR_0018s11630g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | WRKY | ||||||||
Protein Properties | Length: 424aa MW: 47166.3 Da PI: 5.2145 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 77 | 2.3e-24 | 211 | 267 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 DgynWrKYGqK+vk+ + +rsYY+Ct+ +C++kk +e+s++ ++v+ei+++g H h+ Potri.018G107000.6 211 PDGYNWRKYGQKQVKSPRGSRSYYKCTYFDCCAKK-IECSDHSGHVIEIVNKGMHSHD 267 5********************************98.*********************7 PP | |||||||
2 | WRKY | 35 | 2.9e-11 | 384 | 403 | 3 | 22 |
-SS-EEEEEEE--TT-SS-E CS WRKY 3 DgynWrKYGqKevkgsefpr 22 Dgy+WrKYGqK+vkg+++pr Potri.018G107000.6 384 DGYRWRKYGQKMVKGNPHPR 403 9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 16.467 | 205 | 269 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.66E-19 | 206 | 269 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.9E-18 | 207 | 269 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.5E-22 | 210 | 268 | IPR003657 | WRKY domain |
Pfam | PF03106 | 8.2E-16 | 212 | 266 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 2.8E-11 | 367 | 404 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 13.792 | 377 | 413 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.62E-9 | 378 | 407 | IPR003657 | WRKY domain |
SMART | SM00774 | 0.0011 | 382 | 413 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.2E-7 | 384 | 406 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 424 aa Download sequence Send to blast |
MAESESFEAL AVQNKEHKRE GNEQNDGDFV GEEELEGDYN EEEEEEEEEE EKESQLSELQ 60 QIVPSPQKEE QVREEQVETL TVVPRSSTEI LPKENDQYSG LKGNSAAETH VEAEYKEQVG 120 LSHQEVLGSV ADKNSGAQTQ NQLQPSVCPT SLSELSPTSV TQPISSAPSP TPPVKKLSPP 180 EVKNACISEA GNQSSAELKA LYVPVAKTSI PDGYNWRKYG QKQVKSPRGS RSYYKCTYFD 240 CCAKKIECSD HSGHVIEIVN KGMHSHDPPR KNKSTRKSRT GLSVGPILQT TVTEHTVRML 300 KDSEPATLSI ELVQETSAIS ERKRQSSSSS DENKETQIKE ENTSEPEPKR RLKGNLECSK 360 AVLKPGKKPK FVVHAAGDVG ISGDGYRWRK YGQKMVKGNP HPRFGFYFLN FPCMFDNFDL 420 INQ* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.317 | 0.0 | bud| leaf |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.018G107000.6 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GQ377450 | 0.0 | GQ377450.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor 30 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024446055.1 | 0.0 | probable WRKY transcription factor 32 isoform X2 | ||||
TrEMBL | A0A2K1WZ37 | 0.0 | A0A2K1WZ37_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0018s11630.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30935.1 | 1e-74 | WRKY DNA-binding protein 32 |
Link Out ? help Back to Top | |
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Phytozome | Potri.018G107000.6 |
Entrez Gene | 7489444 |