PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.018G107000.5 | ||||||||
Common Name | POPTR_0018s11630g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | WRKY | ||||||||
Protein Properties | Length: 524aa MW: 57483.1 Da PI: 6.0622 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 76.5 | 3e-24 | 211 | 267 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 DgynWrKYGqK+vk+ + +rsYY+Ct+ +C++kk +e+s++ ++v+ei+++g H h+ Potri.018G107000.5 211 PDGYNWRKYGQKQVKSPRGSRSYYKCTYFDCCAKK-IECSDHSGHVIEIVNKGMHSHD 267 5********************************98.*********************7 PP | |||||||
2 | WRKY | 97.7 | 7.8e-31 | 384 | 440 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 Dgy+WrKYGqK+vkg+++pr+YYrCtsagCpv+k++e++ +++++++itY+g H+h+ Potri.018G107000.5 384 DGYRWRKYGQKMVKGNPHPRNYYRCTSAGCPVRKHIETAVDNTNALIITYKGVHDHD 440 9*******************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 16.467 | 205 | 269 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.97E-19 | 206 | 269 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 2.6E-18 | 207 | 269 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.5E-22 | 210 | 268 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.1E-15 | 212 | 266 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.3E-31 | 367 | 442 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.651 | 377 | 442 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.05E-27 | 378 | 442 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.3E-35 | 382 | 441 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.3E-23 | 384 | 439 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 524 aa Download sequence Send to blast |
MAESESFEAL AVQNKEHKRE GNEQNDGDFV GEEELEGDYN EEEEEEEEEE EKESQLSELQ 60 QIVPSPQKEE QVREEQVETL TVVPRSSTEI LPKENDQYSG LKGNSAAETH VEAEYKEQVG 120 LSHQEVLGSV ADKNSGAQTQ NQLQPSVCPT SLSELSPTSV TQPISSAPSP TPPVKKLSPP 180 EVKNACISEA GNQSSAELKA LYVPVAKTSI PDGYNWRKYG QKQVKSPRGS RSYYKCTYFD 240 CCAKKIECSD HSGHVIEIVN KGMHSHDPPR KNKSTRKSRT GLSVGPILQT TVTEHTVRML 300 KDSEPATLSI ELVQETSAIS ERKRQSSSSS DENKETQIKE ENTSEPEPKR RLKGNLECSK 360 AVLKPGKKPK FVVHAAGDVG ISGDGYRWRK YGQKMVKGNP HPRNYYRCTS AGCPVRKHIE 420 TAVDNTNALI ITYKGVHDHD MPVPKKRHGP PSAPLVAAAA PASMSNLPIK KADALQGQVT 480 STQWSVGKEG ELNGETLDLG GEKEKAIESA RTLLSIGFEI KPC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 1e-26 | 370 | 442 | 2 | 74 | WRKY transcription factor 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.317 | 0.0 | bud| leaf |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.018G107000.5 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GQ377450 | 0.0 | GQ377450.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor 30 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024446055.1 | 0.0 | probable WRKY transcription factor 32 isoform X2 | ||||
Swissprot | P59583 | 1e-133 | WRK32_ARATH; Probable WRKY transcription factor 32 | ||||
TrEMBL | A0A2K1WZ37 | 0.0 | A0A2K1WZ37_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0018s11630.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30935.1 | 1e-126 | WRKY DNA-binding protein 32 |
Link Out ? help Back to Top | |
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Phytozome | Potri.018G107000.5 |
Entrez Gene | 7489444 |