PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.018G107000.4
Common NamePOPTR_0018s11630g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 528aa    MW: 57897.5 Da    PI: 5.8124
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.018G107000.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY76.53.1e-24215271259
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          DgynWrKYGqK+vk+ + +rsYY+Ct+ +C++kk +e+s++ ++v+ei+++g H h+
  Potri.018G107000.4 215 PDGYNWRKYGQKQVKSPRGSRSYYKCTYFDCCAKK-IECSDHSGHVIEIVNKGMHSHD 271
                         5********************************98.*********************7 PP
2WRKY97.67.9e-31388444359
                         -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         Dgy+WrKYGqK+vkg+++pr+YYrCtsagCpv+k++e++ +++++++itY+g H+h+
  Potri.018G107000.4 388 DGYRWRKYGQKMVKGNPHPRNYYRCTSAGCPVRKHIETAVDNTNALIITYKGVHDHD 444
                         9*******************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081116.467209273IPR003657WRKY domain
SuperFamilySSF1182905.1E-19210273IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.6E-18211273IPR003657WRKY domain
SMARTSM007746.5E-22214272IPR003657WRKY domain
PfamPF031061.1E-15216270IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.3E-31371446IPR003657WRKY domain
PROSITE profilePS5081131.651381446IPR003657WRKY domain
SuperFamilySSF1182904.18E-27382446IPR003657WRKY domain
SMARTSM007742.3E-35386445IPR003657WRKY domain
PfamPF031061.3E-23388443IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 528 aa     Download sequence    Send to blast
MAESESFEAL AVQNKEHKRE GNEQNDGDFV GEEELEGDYN EEEEEEEEEE EKESQLSELQ  60
QIVPSPQKEE QVREEQVETL TVVPRSSTEI LPKENDQYSD DLAGLKGNSA AETHVEAEYK  120
EQVGLSHQEV LGSVADKNSG AQTQNQLQPS VCPTSLSELS PTSVTQPISS APSPTPPVKK  180
LSPPEVKNAC ISEAGNQSSA ELKALYVPVA KTSIPDGYNW RKYGQKQVKS PRGSRSYYKC  240
TYFDCCAKKI ECSDHSGHVI EIVNKGMHSH DPPRKNKSTR KSRTGLSVGP ILQTTVTEHT  300
VRMLKDSEPA TLSIELVQET SAISERKRQS SSSSDENKET QIKEENTSEP EPKRRLKGNL  360
ECSKAVLKPG KKPKFVVHAA GDVGISGDGY RWRKYGQKMV KGNPHPRNYY RCTSAGCPVR  420
KHIETAVDNT NALIITYKGV HDHDMPVPKK RHGPPSAPLV AAAAPASMSN LPIKKADALQ  480
GQVTSTQWSV GKEGELNGET LDLGGEKEKA IESARTLLSI GFEIKPC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-26374446274WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.3170.0bud| leaf
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.018G107000.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3774500.0GQ377450.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor 30 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024446053.10.0probable WRKY transcription factor 32 isoform X1
SwissprotP595831e-132WRK32_ARATH; Probable WRKY transcription factor 32
TrEMBLA0A2K1WZ370.0A0A2K1WZ37_POPTR; Uncharacterized protein
STRINGPOPTR_0018s11630.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30935.11e-125WRKY DNA-binding protein 32