PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.018G107000.3 | ||||||||
Common Name | POPTR_0018s11630g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | WRKY | ||||||||
Protein Properties | Length: 521aa MW: 57184.7 Da PI: 5.9377 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 76.6 | 3e-24 | 208 | 264 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 DgynWrKYGqK+vk+ + +rsYY+Ct+ +C++kk +e+s++ ++v+ei+++g H h+ Potri.018G107000.3 208 PDGYNWRKYGQKQVKSPRGSRSYYKCTYFDCCAKK-IECSDHSGHVIEIVNKGMHSHD 264 5********************************98.*********************7 PP | |||||||
2 | WRKY | 97.7 | 7.7e-31 | 381 | 437 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 Dgy+WrKYGqK+vkg+++pr+YYrCtsagCpv+k++e++ +++++++itY+g H+h+ Potri.018G107000.3 381 DGYRWRKYGQKMVKGNPHPRNYYRCTSAGCPVRKHIETAVDNTNALIITYKGVHDHD 437 9*******************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 16.467 | 202 | 266 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.97E-19 | 203 | 266 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 2.5E-18 | 204 | 266 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.5E-22 | 207 | 265 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.1E-15 | 209 | 263 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.3E-31 | 364 | 439 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.651 | 374 | 439 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.05E-27 | 375 | 439 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.3E-35 | 379 | 438 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.3E-23 | 381 | 436 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 521 aa Download sequence Send to blast |
MAESESFEAL AVQNKEHKRE GNEQNDGDFV GEEELEGDYN EEEEEEEEEE EKESQLSELQ 60 QIVPSPQKEE QVREEQVETL TVVPRSSTEI LPKENDQYSG NSAAETHVEA EYKEQVGLSH 120 QEVLGSVADK NSGAQTQNQL QPSVCPTSLS ELSPTSVTQP ISSAPSPTPP VKKLSPPEVK 180 NACISEAGNQ SSAELKALYV PVAKTSIPDG YNWRKYGQKQ VKSPRGSRSY YKCTYFDCCA 240 KKIECSDHSG HVIEIVNKGM HSHDPPRKNK STRKSRTGLS VGPILQTTVT EHTVRMLKDS 300 EPATLSIELV QETSAISERK RQSSSSSDEN KETQIKEENT SEPEPKRRLK GNLECSKAVL 360 KPGKKPKFVV HAAGDVGISG DGYRWRKYGQ KMVKGNPHPR NYYRCTSAGC PVRKHIETAV 420 DNTNALIITY KGVHDHDMPV PKKRHGPPSA PLVAAAAPAS MSNLPIKKAD ALQGQVTSTQ 480 WSVGKEGELN GETLDLGGEK EKAIESARTL LSIGFEIKPC * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 2e-26 | 367 | 439 | 2 | 74 | WRKY transcription factor 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.317 | 0.0 | bud| leaf |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.018G107000.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GQ377450 | 0.0 | GQ377450.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor 30 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024446055.1 | 0.0 | probable WRKY transcription factor 32 isoform X2 | ||||
Swissprot | P59583 | 1e-132 | WRK32_ARATH; Probable WRKY transcription factor 32 | ||||
TrEMBL | A0A2K1WZ37 | 0.0 | A0A2K1WZ37_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0018s11630.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30935.1 | 1e-124 | WRKY DNA-binding protein 32 |
Link Out ? help Back to Top | |
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Phytozome | Potri.018G107000.3 |
Entrez Gene | 7489444 |