PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.018G107000.2
Common NamePOPTR_0018s11630g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 524aa    MW: 57483.1 Da    PI: 6.0622
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.018G107000.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY76.53e-24211267259
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          DgynWrKYGqK+vk+ + +rsYY+Ct+ +C++kk +e+s++ ++v+ei+++g H h+
  Potri.018G107000.2 211 PDGYNWRKYGQKQVKSPRGSRSYYKCTYFDCCAKK-IECSDHSGHVIEIVNKGMHSHD 267
                         5********************************98.*********************7 PP
2WRKY97.77.8e-31384440359
                         -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         Dgy+WrKYGqK+vkg+++pr+YYrCtsagCpv+k++e++ +++++++itY+g H+h+
  Potri.018G107000.2 384 DGYRWRKYGQKMVKGNPHPRNYYRCTSAGCPVRKHIETAVDNTNALIITYKGVHDHD 440
                         9*******************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081116.467205269IPR003657WRKY domain
SuperFamilySSF1182904.97E-19206269IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.6E-18207269IPR003657WRKY domain
SMARTSM007746.5E-22210268IPR003657WRKY domain
PfamPF031061.1E-15212266IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.3E-31367442IPR003657WRKY domain
PROSITE profilePS5081131.651377442IPR003657WRKY domain
SuperFamilySSF1182904.05E-27378442IPR003657WRKY domain
SMARTSM007742.3E-35382441IPR003657WRKY domain
PfamPF031061.3E-23384439IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 524 aa     Download sequence    Send to blast
MAESESFEAL AVQNKEHKRE GNEQNDGDFV GEEELEGDYN EEEEEEEEEE EKESQLSELQ  60
QIVPSPQKEE QVREEQVETL TVVPRSSTEI LPKENDQYSG LKGNSAAETH VEAEYKEQVG  120
LSHQEVLGSV ADKNSGAQTQ NQLQPSVCPT SLSELSPTSV TQPISSAPSP TPPVKKLSPP  180
EVKNACISEA GNQSSAELKA LYVPVAKTSI PDGYNWRKYG QKQVKSPRGS RSYYKCTYFD  240
CCAKKIECSD HSGHVIEIVN KGMHSHDPPR KNKSTRKSRT GLSVGPILQT TVTEHTVRML  300
KDSEPATLSI ELVQETSAIS ERKRQSSSSS DENKETQIKE ENTSEPEPKR RLKGNLECSK  360
AVLKPGKKPK FVVHAAGDVG ISGDGYRWRK YGQKMVKGNP HPRNYYRCTS AGCPVRKHIE  420
TAVDNTNALI ITYKGVHDHD MPVPKKRHGP PSAPLVAAAA PASMSNLPIK KADALQGQVT  480
STQWSVGKEG ELNGETLDLG GEKEKAIESA RTLLSIGFEI KPC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-26370442274WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.3170.0bud| leaf
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.018G107000.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3774500.0GQ377450.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor 30 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024446055.10.0probable WRKY transcription factor 32 isoform X2
SwissprotP595831e-133WRK32_ARATH; Probable WRKY transcription factor 32
TrEMBLA0A2K1WZ370.0A0A2K1WZ37_POPTR; Uncharacterized protein
STRINGPOPTR_0018s11630.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30935.11e-126WRKY DNA-binding protein 32