PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.018G107000.1 | ||||||||
Common Name | POPTR_0018s11630g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | WRKY | ||||||||
Protein Properties | Length: 532aa MW: 58373 Da PI: 5.8124 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 76.5 | 3.1e-24 | 215 | 271 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 DgynWrKYGqK+vk+ + +rsYY+Ct+ +C++kk +e+s++ ++v+ei+++g H h+ Potri.018G107000.1 215 PDGYNWRKYGQKQVKSPRGSRSYYKCTYFDCCAKK-IECSDHSGHVIEIVNKGMHSHD 271 5********************************98.*********************7 PP | |||||||
2 | WRKY | 97.6 | 8e-31 | 392 | 448 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 Dgy+WrKYGqK+vkg+++pr+YYrCtsagCpv+k++e++ +++++++itY+g H+h+ Potri.018G107000.1 392 DGYRWRKYGQKMVKGNPHPRNYYRCTSAGCPVRKHIETAVDNTNALIITYKGVHDHD 448 9*******************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 16.467 | 209 | 273 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.1E-19 | 210 | 273 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 2.6E-18 | 211 | 273 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.5E-22 | 214 | 272 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.1E-15 | 216 | 270 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.3E-31 | 375 | 450 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.651 | 385 | 450 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.18E-27 | 386 | 450 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.3E-35 | 390 | 449 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.3E-23 | 392 | 447 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 532 aa Download sequence Send to blast |
MAESESFEAL AVQNKEHKRE GNEQNDGDFV GEEELEGDYN EEEEEEEEEE EKESQLSELQ 60 QIVPSPQKEE QVREEQVETL TVVPRSSTEI LPKENDQYSD DLAGLKGNSA AETHVEAEYK 120 EQVGLSHQEV LGSVADKNSG AQTQNQLQPS VCPTSLSELS PTSVTQPISS APSPTPPVKK 180 LSPPEVKNAC ISEAGNQSSA ELKALYVPVA KTSIPDGYNW RKYGQKQVKS PRGSRSYYKC 240 TYFDCCAKKI ECSDHSGHVI EIVNKGMHSH DPPRKNKSTR KSRTGLSVGP ILQTTVTEHT 300 VRMLKDSEPA TLSIELVQET SAISERKRQS SSSSDENKET QIKEENTSEP EPKRRQSFLL 360 KGNLECSKAV LKPGKKPKFV VHAAGDVGIS GDGYRWRKYG QKMVKGNPHP RNYYRCTSAG 420 CPVRKHIETA VDNTNALIIT YKGVHDHDMP VPKKRHGPPS APLVAAAAPA SMSNLPIKKA 480 DALQGQVTST QWSVGKEGEL NGETLDLGGE KEKAIESART LLSIGFEIKP C* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 2e-26 | 378 | 450 | 2 | 74 | WRKY transcription factor 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.317 | 0.0 | bud| leaf |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.018G107000.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GQ377450 | 0.0 | GQ377450.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor 30 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024446053.1 | 0.0 | probable WRKY transcription factor 32 isoform X1 | ||||
Swissprot | P59583 | 1e-132 | WRK32_ARATH; Probable WRKY transcription factor 32 | ||||
TrEMBL | A0A2K1WZ37 | 0.0 | A0A2K1WZ37_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0018s11630.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5198 | 34 | 56 | Representative plant | OGRP10318 | 6 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30935.1 | 1e-125 | WRKY DNA-binding protein 32 |
Link Out ? help Back to Top | |
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Phytozome | Potri.018G107000.1 |
Entrez Gene | 7489444 |