PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.018G095000.1
Common NamePOPTR_0018s10310g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 433aa    MW: 47588.9 Da    PI: 5.7388
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.018G095000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM144.84.8e-45401652128
                 NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                         ppG+rF+P+d+el+++yL  k+++++l+  + i+ev +yk++P++L  +    +ekewyf ++rd+ky++g+r+nra+ +gyWkatg d++
  Potri.018G095000.1  40 PPGYRFKPKDQELISCYLLCKIRNRPLPR-NGIHEVTLYKYNPETLAeNYEPYGEKEWYFLTPRDRKYPNGDRPNRAAGDGYWKATGADTD 129
                         9**************************99.77**************8333344899*********************************** PP

                 NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         v+s  ++++g kktLvfy+g+ap g kt+W+mheyr+
  Potri.018G095000.1 130 VIS-ANQVIGSKKTLVFYRGKAPGGGKTNWIMHEYRA 165
                         ***.999****************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.11E-5437191IPR003441NAC domain
PROSITE profilePS5100551.19539192IPR003441NAC domain
PfamPF023655.3E-2440164IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MEDQRRGAGL TNPVNNSSIT YPSHAQLGVN PGLVQGDQYP PGYRFKPKDQ ELISCYLLCK  60
IRNRPLPRNG IHEVTLYKYN PETLAENYEP YGEKEWYFLT PRDRKYPNGD RPNRAAGDGY  120
WKATGADTDV ISANQVIGSK KTLVFYRGKA PGGGKTNWIM HEYRARNSDG APKRTNDGMR  180
LDEWVLCRIH NRTDGPPTNR INGLQDDEIE DQPSENNGNL VPQQVVVHGI SEYHNPGSQL  240
GYLDTSYGNS VSAFPQNSQN GLVVGVSQNH AVYSSNTVTG NFNPGSQMGY LDSYGNSASA  300
YPQNSQNGLV AGVSQDHAVT SVATVTGNYN HVSQMGYLGR YGNFASAYPH NSQNGLARVS  360
QDNALPGIPQ TYNLQLDQSS SYVLKTILDY EISSFQFGNG GNDDFGENND DLFGLDNIVP  420
PSTSSDDRND HH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-514019218165NO APICAL MERISTEM PROTEIN
1ut4_B4e-514019218165NO APICAL MERISTEM PROTEIN
1ut7_A4e-514019218165NO APICAL MERISTEM PROTEIN
1ut7_B4e-514019218165NO APICAL MERISTEM PROTEIN
3swm_A5e-514019221168NAC domain-containing protein 19
3swm_B5e-514019221168NAC domain-containing protein 19
3swm_C5e-514019221168NAC domain-containing protein 19
3swm_D5e-514019221168NAC domain-containing protein 19
3swp_A5e-514019221168NAC domain-containing protein 19
3swp_B5e-514019221168NAC domain-containing protein 19
3swp_C5e-514019221168NAC domain-containing protein 19
3swp_D5e-514019221168NAC domain-containing protein 19
4dul_A4e-514019218165NAC domain-containing protein 19
4dul_B4e-514019218165NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.018G095000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002325069.10.0NAC transcription factor 25
TrEMBLB9IM140.0B9IM14_POPTR; Uncharacterized protein
STRINGPOPTR_0018s10310.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2809633
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01720.11e-57NAC family protein