PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.018G094700.1
Common NamePOPTR_0018s10280g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ARR-B
Protein Properties Length: 518aa    MW: 58121.9 Da    PI: 6.8388
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.018G094700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like69.94e-22199253154
             G2-like   1 kprlrWtpeLHerFveaveqLGGs.ekAtPktilelmkvkgLtlehvkSHLQkYR 54 
                         kpr+ W++eLH +Fv++ve+L    e+  Pk+i+e+m+v+gL++e+++SHLQkYR
  Potri.018G094700.1 199 KPRVTWSSELHVKFVDCVEKLEARgERVQPKRIREMMNVEGLSRENIASHLQKYR 253
                         79*******************76437899************************** PP
2Response_reg601.3e-20291371109
                         EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHH CS
        Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalea 89 
                         vl +d + + ++ l  +l+k +y +v++++ + eal++l+e++  ++++++D++  +mdG++ll+ i  e  +lp+i+v+a+++++ + + 
  Potri.018G094700.1  29 VLAIDANVVCLKYLVAILQKCQY-RVTSTTLAAEALKMLRENKndYHVVITDVKRLDMDGFKLLEIIGLEM-DLPVILVSAEDSQSSIMKG 117
                         6788999999*************.***************877778********************996644.8****************** PP

                         HHTTESEEEESS--HHHHHH CS
        Response_reg  90 lkaGakdflsKpfdpeelvk 109
                         ++ Ga+d+l Kp+ ++e+ +
  Potri.018G094700.1 118 IRHGARDYLLKPVRIQEMQN 137
                         **************999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521725.83E-2626147IPR011006CheY-like superfamily
SMARTSM004481.1E-1927139IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23001.8E-3227157No hitNo description
PROSITE profilePS5011032.65828143IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.6E-1629137IPR001789Signal transduction response regulator, receiver domain
CDDcd001568.40E-1830142No hitNo description
SuperFamilySSF466893.05E-14197258IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.7E-22198258IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-19199254IPR006447Myb domain, plants
PfamPF002493.3E-7201253IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 518 aa     Download sequence    Send to blast
MAKNNDEVSE ISMHDEGRGD MFNPADLRVL AIDANVVCLK YLVAILQKCQ YRVTSTTLAA  60
EALKMLRENK NDYHVVITDV KRLDMDGFKL LEIIGLEMDL PVILVSAEDS QSSIMKGIRH  120
GARDYLLKPV RIQEMQNIWQ HVVRKRLSDS SDKSSSFTKE IIEQESVPST EPMAEAEVTG  180
VKEKEIIGNP NGDACSGKKP RVTWSSELHV KFVDCVEKLE ARGERVQPKR IREMMNVEGL  240
SRENIASHLQ KYRNLLKKHK DKMNQQDNAG TDLNRYGRIS ATKNGLWNTY GDSTPKPQSL  300
ASSCTDSKRM FFQPSKQNVF LENSLSSNIT MRKSVPVPEF KGLNFSASSS TWELPTEYTG  360
SQSFGQNPGL CNLSPLLCSP AASFKPSFPM LGQTLIDRSP ASVLSNPSYF PGQYGEGISM  420
NLCGSGTSNF REHDSHCAYR DQKSLLEDFM NSEEAKLFMD EEISDMVNQA IVFFRLTKWQ  480
FDISPLIMVQ TCSTVRQNHN TSFSSPLQFN SDGTPRL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A8e-15198258462ARR10-B
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.018G094700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024445339.10.0two-component response regulator ARR14
TrEMBLB9IM110.0B9IM11_POPTR; Uncharacterized protein
STRINGPOPTR_0018s10280.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1744167
Representative plantOGRP29217120
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31920.12e-69response regulator 10