PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.018G094300.2
Common NamePOPTR_0018s10230g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 127aa    MW: 14113.7 Da    PI: 9.2563
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.018G094300.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.00014365123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        ++C++C + F ++  L  H++ H
  Potri.018G094300.2 43 FSCNYCRRKFYSSQALGGHQNAH 65
                        89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.29E-64070No hitNo description
PROSITE profilePS5015711.0534370IPR007087Zinc finger, C2H2
PROSITE patternPS0002804565IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    Send to blast
MDFQPNTSLH LSLPSNQLNL ELVLEPSSSS SSSPHSPAEP RIFSCNYCRR KFYSSQALGG  60
HQNAHKLERT LAKKSREMSS SVRAHGRSNP RFEHHGHAGV GGSWSLVYRT ENVQEELSQL  120
DLSLRL*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed at in the abscission zone (AZ) of petals, stamens, sepals and siliques. Expressed at lower levels in stamens, carpels, cotyledons, major veins of rosette leaves, trichomes of inflorescence leaves and stems. {ECO:0000269|PubMed:18192438}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of floral organ abscission. Participates in processes that directly or indirectly influence shedding of floral organs. {ECO:0000269|PubMed:18192438}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.018G094300.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024458332.15e-68zinc finger protein 2
SwissprotQ392614e-35ZFP2_ARATH; Zinc finger protein 2
TrEMBLA0A3N7FA951e-66A0A3N7FA95_POPTR; Uncharacterized protein
STRINGPOPTR_0018s10230.14e-87(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.11e-35zinc finger protein 2