PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.018G085700.1
Common NamePOPTR_0018s09270g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 294aa    MW: 31556.4 Da    PI: 4.684
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.018G085700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.28.5e-1869119155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         + ++GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++++g
  Potri.018G085700.1  69 PVFRGVRMRT-WGKWVSEIREPRK---KNRIWLGTFSTPEMAARAHDVAALSIKG 119
                         579****998.**********854...59**********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.7E-1269119IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-2170127IPR016177DNA-binding domain
PROSITE profilePS5103222.62970127IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.8E-3170128IPR001471AP2/ERF domain
SMARTSM003801.2E-3470133IPR001471AP2/ERF domain
CDDcd000181.69E-3071127No hitNo description
PRINTSPR003671.7E-97182IPR001471AP2/ERF domain
PRINTSPR003671.7E-993109IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MTVSPVSNSN SDTDSTSTYS SSLQALSSSS SSGLSPNPVS KPDPEENPRK PKRPRESTST  60
SSNSNSKHPV FRGVRMRTWG KWVSEIREPR KKNRIWLGTF STPEMAARAH DVAALSIKGN  120
SAILNFPKLA GSLPRPASNS PRDVQAAAAK AASMDFNIVP SAPTKVCDDE NNSNSNDSTA  180
SNNNRSSSSL VTQSSSSPSS SSTAEVTSSP SDVATPEELS EIVELPSLET NLEEFPEFVL  240
LGDSWPYNIN QSWYCEDYGA VGTGYFSDQY LSIIPESNVI TTTGAFETSL WEH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-1965127972Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.018G085700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1514620.0EF151462.1 Populus trichocarpa TINY-like protein 2 (TINYL2) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002324441.20.0ethylene-responsive transcription factor ERF043
SwissprotQ9M0807e-51ERF43_ARATH; Ethylene-responsive transcription factor ERF043
TrEMBLB9ILS40.0B9ILS4_POPTR; Uncharacterized protein
STRINGPOPTR_0018s09270.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.11e-47ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]