PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.018G083700.1 | ||||||||
Common Name | POPTR_0018s09060g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | bHLH | ||||||||
Protein Properties | Length: 351aa MW: 37922.3 Da PI: 6.7656 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 11.8 | 0.00046 | 216 | 254 | 12 | 55 |
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ +++ L +l+ + +K + a++L +A+ YI+ Lq Potri.018G083700.1 216 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 254 6677889999999999998.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.585 | 204 | 253 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.1E-10 | 214 | 264 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.67E-6 | 214 | 258 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.9E-7 | 218 | 260 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding | ||||
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 351 aa Download sequence Send to blast |
MNRGVLQSSP VQQMMAGNPN WWSINNMRPP ITHHQQPSPF LPPPSLFPQF LPSISSSSSS 60 SLPLPSWNYD NPDQLPESWS QLLLGGLVCD EDKSNISNFQ AKKMENWEEQ VLHQASSASV 120 MDVKQENSAS NYVYGANEDF QAAAKPTACS QVIPASSPKS CVTSFSSNML DFSTSKGDGR 180 HPPPDRSSDC NSTANGGAVK KARVQSSSAQ PTFKVRKEKL GDRITALHQL VSPFGKTDTA 240 SVLLEAIGYI RFLQSQIEAL SLPYLGSGST NMRQQQSVQG ESNCIFPEDP GQLLNDSCIK 300 RKGASQQDSH GEPKDLRSRG LCLVPVSCTL QVGSDNGADY WAPALGGGFR * |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.4711 | 0.0 | leaf| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.018G083700.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF146381 | 0.0 | EF146381.1 Populus trichocarpa clone WS0117_M02 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002325008.2 | 0.0 | transcription factor bHLH68 | ||||
Swissprot | Q8S3D1 | 1e-103 | BH068_ARATH; Transcription factor bHLH68 | ||||
TrEMBL | B9ILQ2 | 0.0 | B9ILQ2_POPTR; BHLH family protein | ||||
STRING | POPTR_0018s09060.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1223 | 33 | 79 | Representative plant | OGRP3780 | 7 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29100.1 | 2e-92 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.018G083700.1 |
Entrez Gene | 7488103 |
Publications ? help Back to Top | |||
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