PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.018G075500.2 | ||||||||
Common Name | POPTR_0018s06120g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | Trihelix | ||||||||
Protein Properties | Length: 343aa MW: 39956 Da PI: 4.3876 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 36.2 | 1.6e-11 | 109 | 190 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+++e +L+e+ ++ +l+r++l+ +W +v++k+ + ++er+ qC++ ++ l++rykk+k+ ++ s+++yf++++ Potri.018G075500.2 109 EWSEHEKFVLLEVWGDKFLQLGRNSLRSEDWVDVAEKVsETSKIERNEAQCRQMMDVLKRRYKKEKAKGGN-----FSKWAYFNKMD 190 5*************************************555678***********************9998.....469*******8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 9.4E-19 | 108 | 192 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 343 aa Download sequence Send to blast |
MDYIEDDPRY PPKSYSLNRS KKHPLYPQRQ TPTLHYNYDY DYDYDYLDVD EDGDDYNPGG 60 GYARKFQRNE EAFERYPKRQ RLKNPVSNYE FAPRNPRLLA YGDGNSAVEW SEHEKFVLLE 120 VWGDKFLQLG RNSLRSEDWV DVAEKVSETS KIERNEAQCR QMMDVLKRRY KKEKAKGGNF 180 SKWAYFNKMD MLMKQESGTV GGFSLACGVD SGEYVFMDTR VYLDRANMND EMRDSPCESE 240 EEEEEEEGGG SAGNDGMKGL RVLAESVQKF GEIYGKIESS KREQMMELER MRIEFQMDLE 300 LQKKQILDRA QAEIAKIREE DDDEEDEDNS DDDDVSGGNI SK* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.018G075500.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GU288370 | 0.0 | GU288370.1 Populus balsamifera isolate NWL07 haplotype A unknown protein gene, partial sequence. | |||
GenBank | GU288371 | 0.0 | GU288371.1 Populus balsamifera isolate NWL07 haplotype B unknown protein gene, partial sequence. | |||
GenBank | GU288372 | 0.0 | GU288372.1 Populus balsamifera isolate RNA13 haplotype A unknown protein gene, partial sequence. | |||
GenBank | GU288373 | 0.0 | GU288373.1 Populus balsamifera isolate RNA13 haplotype B unknown protein gene, partial sequence. | |||
GenBank | GU288374 | 0.0 | GU288374.1 Populus balsamifera isolate WHR03 haplotype A unknown protein gene, partial sequence. | |||
GenBank | GU288375 | 0.0 | GU288375.1 Populus balsamifera isolate WHR03 haplotype B unknown protein gene, partial sequence. | |||
GenBank | GU288376 | 0.0 | GU288376.1 Populus balsamifera isolate FBK13 haplotype A unknown protein gene, partial sequence. | |||
GenBank | GU288378 | 0.0 | GU288378.1 Populus balsamifera isolate GAL12 haplotype A unknown protein gene, partial sequence. | |||
GenBank | GU288380 | 0.0 | GU288380.1 Populus balsamifera isolate GIL14 haplotype A unknown protein gene, partial sequence. | |||
GenBank | GU288382 | 0.0 | GU288382.1 Populus balsamifera isolate HAY07 haplotype A unknown protein gene, partial sequence. | |||
GenBank | GU288384 | 0.0 | GU288384.1 Populus balsamifera isolate KUU07 haplotype A unknown protein gene, partial sequence. | |||
GenBank | GU288386 | 0.0 | GU288386.1 Populus balsamifera isolate POR11 haplotype A unknown protein gene, partial sequence. | |||
GenBank | GU288388 | 0.0 | GU288388.1 Populus balsamifera isolate STL13 haplotype A unknown protein gene, partial sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024446077.1 | 0.0 | trihelix transcription factor ASIL2 | ||||
TrEMBL | A0A2I4KKG2 | 0.0 | A0A2I4KKG2_POPTR; Trihelix family protein | ||||
TrEMBL | A0A2K1WXE6 | 0.0 | A0A2K1WXE6_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0018s06120.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24490.1 | 6e-85 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.018G075500.2 |
Entrez Gene | 7476265 |