PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.018G075500.1

Common Name

POPTR_0018s06120g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

Trihelix

Protein Properties

Length: 355aa MW: 41349.4 Da PI: 4.3236

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.018G075500.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	36.1	1.7e-11	121	202	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+++e +L+e+ ++ +l+r++l+ +W +v++k+ + ++er+ qC++ ++ l++rykk+k+ ++ s+++yf++++ Potri.018G075500.1 121 EWSEHEKFVLLEVWGDKFLQLGRNSLRSEDWVDVAEKVsETSKIERNEAQCRQMMDVLKRRYKKEKAKGGN-----FSKWAYFNKMD 202 5***********************************555678*******************9998.....469*****8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.0E-18	120	204	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence Send to blast
MDYIEDDPRY PPKSYSLNRS KKHPLYPQRQ TPTLHYNYDY DYDYDYLDVD EDGDELDDEF 60 LDKNDSSYNP GGGYARKFQR NEEAFERYPK RQRLKNPVSN YEFAPRNPRL LAYGDGNSAV 120 EWSEHEKFVL LEVWGDKFLQ LGRNSLRSED WVDVAEKVSE TSKIERNEAQ CRQMMDVLKR 180 RYKKEKAKGG NFSKWAYFNK MDMLMKQESG TVGGFSLACG VDSGEYVFMD TRVYLDRANM 240 NDEMRDSPCE SEEEEEEEEG GGSAGNDGMK GLRVLAESVQ KFGEIYGKIE SSKREQMMEL 300 ERMRIEFQMD LELQKKQILD RAQAEIAKIR EEDDDEEDED NSDDDDVSGG NISK*

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence Send to blast

MDYIEDDPRY PPKSYSLNRS KKHPLYPQRQ TPTLHYNYDY DYDYDYLDVD EDGDELDDEF  60
LDKNDSSYNP GGGYARKFQR NEEAFERYPK RQRLKNPVSN YEFAPRNPRL LAYGDGNSAV  120
EWSEHEKFVL LEVWGDKFLQ LGRNSLRSED WVDVAEKVSE TSKIERNEAQ CRQMMDVLKR  180
RYKKEKAKGG NFSKWAYFNK MDMLMKQESG TVGGFSLACG VDSGEYVFMD TRVYLDRANM  240
NDEMRDSPCE SEEEEEEEEG GGSAGNDGMK GLRVLAESVQ KFGEIYGKIE SSKREQMMEL  300
ERMRIEFQMD LELQKKQILD RAQAEIAKIR EEDDDEEDED NSDDDDVSGG NISK*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.018G075500.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GU288370	0.0	GU288370.1 Populus balsamifera isolate NWL07 haplotype A unknown protein gene, partial sequence.
GenBank	GU288371	0.0	GU288371.1 Populus balsamifera isolate NWL07 haplotype B unknown protein gene, partial sequence.
GenBank	GU288372	0.0	GU288372.1 Populus balsamifera isolate RNA13 haplotype A unknown protein gene, partial sequence.
GenBank	GU288373	0.0	GU288373.1 Populus balsamifera isolate RNA13 haplotype B unknown protein gene, partial sequence.
GenBank	GU288374	0.0	GU288374.1 Populus balsamifera isolate WHR03 haplotype A unknown protein gene, partial sequence.
GenBank	GU288375	0.0	GU288375.1 Populus balsamifera isolate WHR03 haplotype B unknown protein gene, partial sequence.
GenBank	GU288376	0.0	GU288376.1 Populus balsamifera isolate FBK13 haplotype A unknown protein gene, partial sequence.
GenBank	GU288378	0.0	GU288378.1 Populus balsamifera isolate GAL12 haplotype A unknown protein gene, partial sequence.
GenBank	GU288380	0.0	GU288380.1 Populus balsamifera isolate GIL14 haplotype A unknown protein gene, partial sequence.
GenBank	GU288382	0.0	GU288382.1 Populus balsamifera isolate HAY07 haplotype A unknown protein gene, partial sequence.
GenBank	GU288384	0.0	GU288384.1 Populus balsamifera isolate KUU07 haplotype A unknown protein gene, partial sequence.
GenBank	GU288386	0.0	GU288386.1 Populus balsamifera isolate POR11 haplotype A unknown protein gene, partial sequence.
GenBank	GU288388	0.0	GU288388.1 Populus balsamifera isolate STL13 haplotype A unknown protein gene, partial sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024446077.1	0.0	trihelix transcription factor ASIL2
TrEMBL	A0A2K1WXE6	0.0	A0A2K1WXE6_POPTR; Uncharacterized protein
STRING	POPTR_0018s06120.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2441	34	80
Representative plant	OGRP487	16	84

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	4e-83	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Potri.018G075500.1
Entrez Gene	7476265