PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.018G074200.1
Common NamePOPTR_0018s06410g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family G2-like
Protein Properties Length: 464aa    MW: 50668.5 Da    PI: 7.1419
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.018G074200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.31.3e-31249304156
             G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                         k+r++W+p+LH+rFv+a++ LGGs++AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  Potri.018G074200.1 249 KARRCWSPDLHRRFVNALHMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 304
                         68****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.45E-17246307IPR009057Homeodomain-like
PROSITE profilePS5129413.491246306IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.2E-28247307IPR009057Homeodomain-like
TIGRFAMsTIGR015575.9E-26249304IPR006447Myb domain, plants
PfamPF002493.6E-7251302IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009266Biological Processresponse to temperature stimulus
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010452Biological Processhistone H3-K36 methylation
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:1903507Biological Processnegative regulation of nucleic acid-templated transcription
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MASPSELSLD CKPHSYSMLL KSFGEQNDQT QKLEEFLSLL EEERLKIDVF KRELPLCMQL  60
LTNAVETSRQ QLQAYRANQV PTPVLEEFIP LKTPTSEALE KTTNISDKAN WMTTAQLWSQ  120
DSNESKPQTT LTSPKQTDIG FNVSSKLALD TKQRNGGAFL PFSKERNLCP SPTLALSSTD  180
KHMEFDHKKC SEAENGFSCP KRESSGNKIG NGGVVIEQAK GAVNNSSSDG QATNTATAST  240
TSTTQTHRKA RRCWSPDLHR RFVNALHMLG GSQVATPKQI RELMKVDGLT NDEVKSHLQK  300
YRLHTRRPSP SPQAAGAPPP QLVVLGGIWV PPEYATAAAA AHSGGPTLYG AHQASHAPPP  360
HFCAAPPVSQ DFYTAAATPP PPLHHHTLYH QLHLYKPTAQ AHSSPESDVR GTRDRSESIE  420
DGKSESSSWK GESGENDGGE RRGLAALRED CEESNGSEIT LKF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A9e-14249302255Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B9e-14249302255Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A9e-14249302154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B9e-14249302154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C9e-14249302154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D9e-14249302154Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A9e-14249302255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C9e-14249302255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D9e-14249302255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F9e-14249302255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H9e-14249302255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J9e-14249302255Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed 3 days after germination, with a gradual decrease before the floral transition and remains at low levels afterward. {ECO:0000269|PubMed:25132385}.
UniprotTISSUE SPECIFICITY: Specifically expressed in vascular tissues of cotyledons, rosette leaves and cauline leaves. Not detected in the vegetative shoot apical meristem. {ECO:0000269|PubMed:25132385}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as a flowering repressor, directly repressing FT expression in a dosage-dependent manner in the leaf vasculature. {ECO:0000269|PubMed:25132385}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00261DAPTransfer from AT2G03500Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.018G074200.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by SVP. Down-regulated by high temperature and gibberellic acid treatment. Not regulated by photoperiod, circadian rhythm under long days or vernalization. {ECO:0000269|PubMed:25132385}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002324957.20.0myb family transcription factor EFM
SwissprotQ9ZQ851e-136EFM_ARATH; Myb family transcription factor EFM
TrEMBLA0A2K1WXC80.0A0A2K1WXC8_POPTR; Uncharacterized protein
STRINGPOPTR_0018s06410.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54663455
Representative plantOGRP43031624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.12e-98G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]