PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.018G068700.1
Common NamePOPTR_0018s06790g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 453aa    MW: 50864.5 Da    PI: 6.8106
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.018G068700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM114.88.8e-36471891128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk. 79 
                         lp+G++F+Ptd+el+ e+L++kve+k+      +   +    +i+   +i++++P++Lp  v+ +  + +fF++ +k+y+tg+rk+r+++ 
  Potri.018G068700.1  47 LPAGVKFDPTDQELI-EHLEAKVEAKDmrshplI---DefipTIEGEdGICYTHPEKLP-GVTRDGLSRHFFHRPSKAYTTGTRKRRKIQt 132
                         799************.99*********5554442...143333666646**********.555666799******************7333 PP

                 NAM  80 .......sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                                + +W++tgk+++v++ +g+++g+kk+Lv+y   g+++++ekt+Wvmh+y+l
  Potri.018G068700.1 133 ecdlqggETRWHKTGKTRPVMV-NGKQKGCKKILVLYtnFGKNRRPEKTNWVMHQYHL 189
                         4555544778************.999***********5547999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-3843208IPR003441NAC domain
PROSITE profilePS5100533.02847208IPR003441NAC domain
PfamPF023652.5E-1648189IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MSTRCSMASI SSSDLIDAKL EEHQLCGSKQ CPGCGHKLEG KPDWLGLPAG VKFDPTDQEL  60
IEHLEAKVEA KDMRSHPLID EFIPTIEGED GICYTHPEKL PGVTRDGLSR HFFHRPSKAY  120
TTGTRKRRKI QTECDLQGGE TRWHKTGKTR PVMVNGKQKG CKKILVLYTN FGKNRRPEKT  180
NWVMHQYHLG QHEEEKEGEL VVSKIFYQTQ PRQCNYTDRA ASIGEGSSEP NSRRDGGSGS  240
CSSKEISLHG DEISGTGTVA SSLTSYTAMD IQQLKSDHFC FTPFRKGFDE VGIGEASVTR  300
EASASATCDE IREHHQMPHH VAHDPHQQQT QQQQHHYHHH QTAHHQFATT AFHMSTPSHP  360
FSTIISPPSL NHSIILDEDP YHVSRIMLQN EIQQQQQHHK MGGRSASGLE ELIMGCTSND  420
VKEDSSIANP QEAEWLKYSS FWQDPGNQDH HG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-134518913140Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the vascular cylinder of roots. Expressed in the differentiation zone of the root stele. {ECO:0000269|PubMed:25265867}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.018G068700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB9707950.0AB970795.1 Populus tremula x Populus tremuloides PtxtNAC128 mRNA for NAC transcriptional factor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006371968.10.0NAC domain-containing protein 75
RefseqXP_024445495.10.0NAC domain-containing protein 75
SwissprotQ9M0F80.0NAC75_ARATH; NAC domain-containing protein 75
TrEMBLB9N5H60.0B9N5H6_POPTR; NAC family protein
STRINGPOPTR_0018s06790.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45203458
Representative plantOGRP5251585
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.10.0NAC domain containing protein 75
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]