PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.018G066300.2
Common NamePOPTR_0018s07040g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB_related
Protein Properties Length: 280aa    MW: 30638.6 Da    PI: 9.6549
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.018G066300.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.74.1e-11556147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                        +++W  eE+e l  +++++G+g Wk I r          R+  ++k++w++ 
  Potri.018G066300.2  5 KQKWKSEEEEALRAGIAKHGTGKWKNIQRDPEfnpylRSRSNIDLKDKWRNM 56
                        79************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.711161IPR017930Myb domain
SuperFamilySSF466897.41E-15259IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.7E-13457IPR009057Homeodomain-like
SMARTSM007179.9E-7459IPR001005SANT/Myb domain
PfamPF002495.5E-7556IPR001005SANT/Myb domain
CDDcd116602.42E-19657No hitNo description
SuperFamilySSF467857.62E-17114197IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.105.2E-16114190IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005266.4E-21115180IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150424.959117185IPR005818Linker histone H1/H5, domain H15
PfamPF005381.9E-11119178IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MGNPKQKWKS EEEEALRAGI AKHGTGKWKN IQRDPEFNPY LRSRSNIDLK DKWRNMTVSA  60
GSQSVKDKSR TLKAKSSPDA AAVVAASTPL SNPHTSAVAA VDVVIDDSSE AAADSKTAPK  120
YNAMIFEAIS ALNEPNGADT SAIISYIERR QELPQNFRRQ LSSRLRRLVA QEKLEKVQNF  180
YKIKKASSFG TKTPTPKQKE VRPKPEQNTG LINSGDTVAE AADDAAYMVA EAENKSFVAT  240
EAVKESERVS KMAEDANSLL QLANEILEKC LRGEIVVMG*
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00652PBMTransfer from LOC_Os01g51154Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.018G066300.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006371994.10.0telomere repeat-binding factor 4
RefseqXP_024445699.10.0telomere repeat-binding factor 4
SwissprotF4IEY46e-74TRB5_ARATH; Telomere repeat-binding factor 5
TrEMBLB9N5F40.0B9N5F4_POPTR; Uncharacterized protein
STRINGPOPTR_0018s07040.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72740.24e-59MYB_related family protein
Publications ? help Back to Top
  1. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]