PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.018G065400.1 | ||||||||
Common Name | POPTR_0018s07140g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | GRF | ||||||||
Protein Properties | Length: 383aa MW: 43351.2 Da PI: 8.5832 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 78.6 | 5.9e-25 | 76 | 119 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrg++rsrk++e Potri.018G065400.1 76 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVE 119 79***************************************997 PP | |||||||
2 | QLQ | 59.7 | 8.1e-21 | 10 | 44 | 2 | 36 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 +FTa+Q+q+L++Q+l+yKy++++ P+Pp+Ll+ i+ Potri.018G065400.1 10 PFTASQWQELEHQALIYKYMVSGIPIPPDLLFTIK 44 8******************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 3.1E-12 | 9 | 45 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 22.741 | 10 | 45 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 1.1E-15 | 10 | 43 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 24.98 | 76 | 120 | IPR014977 | WRC domain |
Pfam | PF08879 | 1.4E-20 | 77 | 119 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 383 aa Download sequence Send to blast |
MIMSGGNRFP FTASQWQELE HQALIYKYMV SGIPIPPDLL FTIKRSVCLD SSKLFPHQHP 60 HFAWSCFQMG LGRKTDPEPG RCRRTDGKKW RCSKEAYPDS KYCERHMHRG KNRSRKPVEV 120 ATQTQSTSPP TVSSITRNHS NNSLLTTSSH SHLSLLMSPE TQHQNHLHYP AGYHAHPNHQ 180 FLSSSTPTGI GLLPQENSTH LLLDSGGSSM TNTDFRRSVY GLKEEVDEHA FFSEPSGSMR 240 RLSGSSLDDA WQLTPLTMNS SSSSTNSSKQ RSLSSLHNEY SYLQLQSLCD HDIPKQQKQH 300 QHNYLLGNDI SNLGPIKMEK EEPQKTVHRF FDEWPPKNKE SWFDLDNRSS NSASVSTTRL 360 SISIPSSHDF LPIFNSRTNN DA* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.14421 | 1e-151 | bud |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.018G065400.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC182662 | 0.0 | AC182662.2 Populus trichocarpa clone Pop1-15O24, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024445834.1 | 0.0 | growth-regulating factor 1 isoform X1 | ||||
TrEMBL | A0A2K1WWV8 | 0.0 | A0A2K1WWV8_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0018s07140.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4043 | 34 | 59 | Representative plant | OGRP460 | 16 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 8e-55 | growth-regulating factor 5 |
Link Out ? help Back to Top | |
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Phytozome | Potri.018G065400.1 |
Entrez Gene | 18107701 |