PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.018G053600.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | GATA | ||||||||
Protein Properties | Length: 304aa MW: 33666.7 Da PI: 8.6949 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 59.5 | 4.2e-19 | 173 | 206 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 Cs C+tt+TplWR+gp+g+k+LCnaCG+++rk + Potri.018G053600.1 173 CSDCNTTSTPLWRSGPRGPKSLCNACGIRQRKAR 206 *******************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 12.848 | 167 | 203 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 1.5E-21 | 167 | 218 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 5.7E-13 | 167 | 207 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.2E-15 | 171 | 206 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 3.45E-12 | 172 | 200 | No hit | No description |
Pfam | PF00320 | 8.9E-17 | 173 | 206 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 173 | 198 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 304 aa Download sequence Send to blast |
MTPVYLNPAS SSFPFVDLKE EQHLQLFLSP HQAATSLSGP TNFFNTTHDQ RESKLAESRQ 60 HDDHEVDKYS ISLGRSSDHK LFPSSSFQPV VNDDDDDSNF HKLFSSKTED GTEGSGDSSV 120 NWMPSRMTTM QEMTNSNRSE TDHQPMKFML KFHNQQCQNN DINSSSNSNI RVCSDCNTTS 180 TPLWRSGPRG PKSLCNACGI RQRKARRAMA AAENGAVISV EASSSTKSKV NSKVKKLRTS 240 HVVQGKKLSN KPPNPPLQSQ KKLCFKNLAL SLSKNPALRQ VLPHDVEEAA ILLMELSCGF 300 IHS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.018G053600.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF148510 | 0.0 | EF148510.1 Populus trichocarpa x Populus deltoides clone WS0131_P03 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024445809.1 | 0.0 | putative GATA transcription factor 22 | ||||
TrEMBL | A0A2K1WW78 | 0.0 | A0A2K1WW78_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0006s24560.1 | 1e-150 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1992 | 34 | 84 | Representative plant | OGRP68 | 17 | 287 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G26150.1 | 2e-16 | cytokinin-responsive gata factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Potri.018G053600.1 |