PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.018G053600.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GATA
Protein Properties Length: 304aa    MW: 33666.7 Da    PI: 8.6949
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.018G053600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.54.2e-19173206134
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                         Cs C+tt+TplWR+gp+g+k+LCnaCG+++rk +
  Potri.018G053600.1 173 CSDCNTTSTPLWRSGPRGPKSLCNACGIRQRKAR 206
                         *******************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.848167203IPR000679Zinc finger, GATA-type
SMARTSM004011.5E-21167218IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.7E-13167207No hitNo description
Gene3DG3DSA:3.30.50.101.2E-15171206IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.45E-12172200No hitNo description
PfamPF003208.9E-17173206IPR000679Zinc finger, GATA-type
PROSITE patternPS003440173198IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MTPVYLNPAS SSFPFVDLKE EQHLQLFLSP HQAATSLSGP TNFFNTTHDQ RESKLAESRQ  60
HDDHEVDKYS ISLGRSSDHK LFPSSSFQPV VNDDDDDSNF HKLFSSKTED GTEGSGDSSV  120
NWMPSRMTTM QEMTNSNRSE TDHQPMKFML KFHNQQCQNN DINSSSNSNI RVCSDCNTTS  180
TPLWRSGPRG PKSLCNACGI RQRKARRAMA AAENGAVISV EASSSTKSKV NSKVKKLRTS  240
HVVQGKKLSN KPPNPPLQSQ KKLCFKNLAL SLSKNPALRQ VLPHDVEEAA ILLMELSCGF  300
IHS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.018G053600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1485100.0EF148510.1 Populus trichocarpa x Populus deltoides clone WS0131_P03 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024445809.10.0putative GATA transcription factor 22
TrEMBLA0A2K1WW780.0A0A2K1WW78_POPTR; Uncharacterized protein
STRINGPOPTR_0006s24560.11e-150(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19923484
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.12e-16cytokinin-responsive gata factor 1