PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.018G049300.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | NAC | ||||||||
Protein Properties | Length: 370aa MW: 40864.2 Da PI: 8.1551 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 94.1 | 2.2e-29 | 33 | 111 | 51 | 128 |
NAM 51 vkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++eke+yf+++rd+ky+++ r+nr+t +g+Wkatg+d++++s+ ++e +glkk+Lvfy+gra kg ktdW+mhe+rl Potri.018G049300.1 33 ATTGEKELYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSSdGTECIGLKKSLVFYRGRAAKGIKTDWMMHEFRL 111 345889**************************************956677***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 33.802 | 1 | 142 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 7.32E-33 | 31 | 142 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.3E-11 | 38 | 111 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 370 aa Download sequence Send to blast |
MHVKQTCFAL PFRQCKKFPC IFLLKAYRVQ ELATTGEKEL YFYCPRDRKY RNSARPNRVT 60 GAGFWKATGT DRPIYSSDGT ECIGLKKSLV FYRGRAAKGI KTDWMMHEFR LPSLAEPSPP 120 KKLLDKSLPA NDAWAICRIF KKTNSMAQRA LSHSWVSPLP DTTASDLFAQ GAHFPQFCSE 180 NMSCVTEIGS SFHIGSNSDF QQASPASFSV LDIPSYKPIN PAVYKSYLCP VSNGDLSNNF 240 LCSQLEISGP IKSTDDAHSM LLNPALIGEA GKTSESIEYE GSQQQFNGFS INLLQEMQGN 300 TGTGDDEAGF RKNPSSIHEN NLVGTIRSIG FPFSLPSNLA DAWKSNLAWD SPSCHSEMST 360 TYSTNKCNT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-31 | 33 | 145 | 66 | 168 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-31 | 33 | 145 | 66 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-31 | 33 | 145 | 66 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-31 | 33 | 145 | 66 | 168 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-31 | 33 | 145 | 69 | 171 | NAC domain-containing protein 19 |
3swm_B | 3e-31 | 33 | 145 | 69 | 171 | NAC domain-containing protein 19 |
3swm_C | 3e-31 | 33 | 145 | 69 | 171 | NAC domain-containing protein 19 |
3swm_D | 3e-31 | 33 | 145 | 69 | 171 | NAC domain-containing protein 19 |
3swp_A | 3e-31 | 33 | 145 | 69 | 171 | NAC domain-containing protein 19 |
3swp_B | 3e-31 | 33 | 145 | 69 | 171 | NAC domain-containing protein 19 |
3swp_C | 3e-31 | 33 | 145 | 69 | 171 | NAC domain-containing protein 19 |
3swp_D | 3e-31 | 33 | 145 | 69 | 171 | NAC domain-containing protein 19 |
4dul_A | 3e-31 | 33 | 145 | 66 | 168 | NAC domain-containing protein 19 |
4dul_B | 3e-31 | 33 | 145 | 66 | 168 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.018G049300.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KR605204 | 1e-124 | KR605204.1 Manihot esculenta NAC transcription factors 66 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024446115.1 | 0.0 | protein FEZ | ||||
TrEMBL | A0A2K1X4Z9 | 0.0 | A0A2K1X4Z9_POPTR; Uncharacterized protein | ||||
TrEMBL | A0A3N7G4I7 | 0.0 | A0A3N7G4I7_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0004s12850.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2013 | 34 | 90 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26870.1 | 1e-67 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.018G049300.1 |