PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.018G049300.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 370aa    MW: 40864.2 Da    PI: 8.1551
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.018G049300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM94.12.2e-293311151128
                 NAM  51 vkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         ++++eke+yf+++rd+ky+++ r+nr+t +g+Wkatg+d++++s+ ++e +glkk+Lvfy+gra kg ktdW+mhe+rl
  Potri.018G049300.1  33 ATTGEKELYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSSdGTECIGLKKSLVFYRGRAAKGIKTDWMMHEFRL 111
                         345889**************************************956677***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100533.8021142IPR003441NAC domain
SuperFamilySSF1019417.32E-3331142IPR003441NAC domain
PfamPF023651.3E-1138111IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MHVKQTCFAL PFRQCKKFPC IFLLKAYRVQ ELATTGEKEL YFYCPRDRKY RNSARPNRVT  60
GAGFWKATGT DRPIYSSDGT ECIGLKKSLV FYRGRAAKGI KTDWMMHEFR LPSLAEPSPP  120
KKLLDKSLPA NDAWAICRIF KKTNSMAQRA LSHSWVSPLP DTTASDLFAQ GAHFPQFCSE  180
NMSCVTEIGS SFHIGSNSDF QQASPASFSV LDIPSYKPIN PAVYKSYLCP VSNGDLSNNF  240
LCSQLEISGP IKSTDDAHSM LLNPALIGEA GKTSESIEYE GSQQQFNGFS INLLQEMQGN  300
TGTGDDEAGF RKNPSSIHEN NLVGTIRSIG FPFSLPSNLA DAWKSNLAWD SPSCHSEMST  360
TYSTNKCNT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-313314566168NO APICAL MERISTEM PROTEIN
1ut4_B3e-313314566168NO APICAL MERISTEM PROTEIN
1ut7_A3e-313314566168NO APICAL MERISTEM PROTEIN
1ut7_B3e-313314566168NO APICAL MERISTEM PROTEIN
3swm_A3e-313314569171NAC domain-containing protein 19
3swm_B3e-313314569171NAC domain-containing protein 19
3swm_C3e-313314569171NAC domain-containing protein 19
3swm_D3e-313314569171NAC domain-containing protein 19
3swp_A3e-313314569171NAC domain-containing protein 19
3swp_B3e-313314569171NAC domain-containing protein 19
3swp_C3e-313314569171NAC domain-containing protein 19
3swp_D3e-313314569171NAC domain-containing protein 19
4dul_A3e-313314566168NAC domain-containing protein 19
4dul_B3e-313314566168NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.018G049300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR6052041e-124KR605204.1 Manihot esculenta NAC transcription factors 66 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024446115.10.0protein FEZ
TrEMBLA0A2K1X4Z90.0A0A2K1X4Z9_POPTR; Uncharacterized protein
TrEMBLA0A3N7G4I70.0A0A3N7G4I7_POPTR; Uncharacterized protein
STRINGPOPTR_0004s12850.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20133490
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26870.11e-67NAC family protein