PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.018G045100.4 | ||||||||
Common Name | HB7, POPTR_0018s08110g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 840aa MW: 92388.8 Da PI: 6.5455 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60 | 3.8e-19 | 21 | 79 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le+l++++++p+ ++r++L +++ +++ +q+kvWFqNrR +ek+ Potri.018G045100.4 21 KYVRYTPEQVEALERLYHECPKPTSTRRQQLIRECpilsHIEPKQIKVWFQNRRCREKQ 79 5679*****************************************************97 PP | |||||||
2 | START | 179.8 | 1.6e-56 | 166 | 374 | 2 | 205 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..ga 90 +aee+++++++ka+ ++ Wv+++ +++g++++ +++ s++++g a+ra+g+v +++ v+e+l+d++ W +++++++++++ s++ g+ Potri.018G045100.4 166 IAEENLAQFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPT-RVAEILKDRPSWFRDCRAVDVINAMSTAngGT 255 7899******************************************************.8888888888*****************999** PP EEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX CS START 91 lqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlp 177 ++l +++l+a+++l+p Rdf+ +Ry+ l++g++v++++S++++q+ p+ ++++vRae+lpSg+li+p+++g+s +++v+h+dl+ +++ Potri.018G045100.4 256 IELLYMQLYAPTTLAPaRDFLLLRYTSVLEDGSLVVCERSLNNTQNGPSmppTQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSV 346 ***********************************************99999*************************************** PP HHHHHHHHHHHHHHHHHHHHHHTXXXXX CS START 178 hwllrslvksglaegaktwvatlqrqce 205 +++lr+l++s++ ++kt++a+l+++++ Potri.018G045100.4 347 PEVLRPLYESSTLLAQKTTMAALRHLRQ 374 ***********************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.677 | 16 | 80 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.0E-15 | 18 | 84 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 7.7E-17 | 20 | 84 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 2.02E-16 | 21 | 81 | No hit | No description |
Pfam | PF00046 | 1.1E-16 | 22 | 79 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-18 | 23 | 79 | IPR009057 | Homeodomain-like |
CDD | cd14686 | 1.15E-6 | 73 | 112 | No hit | No description |
PROSITE profile | PS50848 | 26.147 | 156 | 384 | IPR002913 | START domain |
CDD | cd08875 | 3.78E-79 | 160 | 375 | No hit | No description |
SMART | SM00234 | 3.3E-43 | 165 | 375 | IPR002913 | START domain |
SuperFamily | SSF55961 | 9.34E-38 | 165 | 377 | No hit | No description |
Gene3D | G3DSA:3.30.530.20 | 1.0E-23 | 165 | 371 | IPR023393 | START-like domain |
Pfam | PF01852 | 4.0E-54 | 166 | 374 | IPR002913 | START domain |
Pfam | PF08670 | 1.5E-50 | 698 | 838 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 840 aa Download sequence Send to blast |
MMGVSSTCKD GSTRITMDNG KYVRYTPEQV EALERLYHEC PKPTSTRRQQ LIRECPILSH 60 IEPKQIKVWF QNRRCREKQR KEASRLQAVN RKLTAMNKLL MEENDRLQKQ VSQLVYENSY 120 FRQQTQNATT LATTDTSCES VVTSGQHRLT PQHPPRDASP AGLLSIAEEN LAQFLSKATG 180 TAVEWVQMPG MKPGPDSIGI VAISHGCTGV AARACGLVGL EPTRVAEILK DRPSWFRDCR 240 AVDVINAMST ANGGTIELLY MQLYAPTTLA PARDFLLLRY TSVLEDGSLV VCERSLNNTQ 300 NGPSMPPTQH FVRAEMLPSG YLIRPCEGGG SIIHIVDHMD LEPWSVPEVL RPLYESSTLL 360 AQKTTMAALR HLRQISQEIS QPNVTGWGRR PAALRALSQR LSKGFNEAVN GFADEGWSLL 420 ESDGIDDVTV LVNSSPTKTM GVNFSYDNGF PSMNNAVLCA KASMLLQNVP PAILLRFLRE 480 HRSEWADNGI DAYAASAIKA GPCSLPVSRA GNFGGQVILP LAHTIENEEA KVIKLENMGY 540 REDMLMPGDV FLLQLCSGVD ENAVGTCAEL IFAPIDASFS DDAPIIPSGF RIIPLDSGMD 600 ASSPNRTLDL ASALEVGPAG NRASGDLSGR SGCTKSVMTI AFQFAFEMHL QENVASMARQ 660 YVRSIIASVQ RVALALSPSH FGSHAGFWPP HGTPEAHTLA RWICESYRIY LGVKLLKNEG 720 SDSILKTLWH HSDALVCCSL KTLPVFTFSN QAGLDMLETT LVALQDITLE KIFDDNGRKT 780 LCSEFPQIMQ QGFMCLPGGI CLSSMGRPVS YERAVAWKVL NEEESAHCIC FMFMNWSFV* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.9881 | 0.0 | bud| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in the procambial cells and the developing vascular system of embryos, roots and shoots. Expressed during the early stages of revascularization after cutting experiment. {ECO:0000269|PubMed:12447534, ECO:0000269|PubMed:8575317}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of vascular development. May promote differentiation of precambial and cambial cells. {ECO:0000269|PubMed:11402194, ECO:0000269|PubMed:15598805}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.018G045100.4 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. Repressed by miR165. {ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:8575317}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY919622 | 0.0 | AY919622.1 Populus trichocarpa class III HD-Zip protein 7 (HB7) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024446213.1 | 0.0 | homeobox-leucine zipper protein ATHB-8 isoform X1 | ||||
Refseq | XP_024446214.1 | 0.0 | homeobox-leucine zipper protein ATHB-8 isoform X1 | ||||
Swissprot | Q39123 | 0.0 | ATHB8_ARATH; Homeobox-leucine zipper protein ATHB-8 | ||||
TrEMBL | A0A2K1WVS3 | 0.0 | A0A2K1WVS3_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0018s08110.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32880.1 | 0.0 | homeobox gene 8 |
Link Out ? help Back to Top | |
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Phytozome | Potri.018G045100.4 |
Entrez Gene | 7462919 |