PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.018G039300.2
Common NamePOPTR_0018s00600g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family CPP
Protein Properties Length: 572aa    MW: 61537.2 Da    PI: 8.3367
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.018G039300.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR21.74e-0711361642
                 TCR 16 kYCeCfaagkkCseeCkCedCkNkeek 42
                        +YCeCfaag +C+  C+C +C+N+ e+
  Potri.018G039300.2 11 RYCECFAAGIHCNG-CNCLNCRNNVEN 36
                        6*************.********9875 PP
2TCR48.22.1e-1581120140
                 TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                         k++kgCnCk+s ClkkYCeCf+ + +Cse+CkC +CkN e
  Potri.018G039300.2  81 KHNKGCNCKRSGCLKKYCECFQGNIFCSENCKCLECKNFE 120
                         589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5163430.1331121IPR005172CRC domain
SMARTSM011140.0161136IPR033467Tesmin/TSO1-like CXC domain
PfamPF036388.0E-51133IPR005172CRC domain
SMARTSM011145.1E-1881122IPR033467Tesmin/TSO1-like CXC domain
PfamPF036383.1E-1284119IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 572 aa     Download sequence    Send to blast
MINKQLPGPF RYCECFAAGI HCNGCNCLNC RNNVENEKER KEAVETTLQR NPNAFRPKIA  60
SSPHGSRDTT EDAQEVQMLG KHNKGCNCKR SGCLKKYCEC FQGNIFCSEN CKCLECKNFE  120
GSDERRALFH GSPHATAYAQ QATNAAISGA IGSSGYGTTL ASKKRKSEEL FGIATKDQPA  180
HSTAKFSQGN TLRNSAAFSS PLSVPVSRTA NGAVLGSTKP TYRSPLAGVL KPQFVKEICT  240
LLVAISGKAT EALAGKVGKM DTRSERENIE TYSASPTQEK ESSLKGWNAI EHMPDDCLNG  300
NKAEKDGSID SGDVENARPS SPDIDLMCHE EEMMFMEMGS PIGVARLCQS KTQKPDDGYE  360
CSQLHAEQEK IILTSFLDIL NTVSTYGSIK VCQSGNQKEP AVRDTVKTGI ETVNHRNGYH  420
NRGAATLVLN GDPPNKAASP IQKGLTERST IKAGIQMGNH KAHHSNGTTQ SPVIANLAST  480
VLPIKAASLQ QESVERGTKT ARNDIGNRSG YDNGTVKSLV LAPSASNTDL PVKAASPVEN  540
RKRNPAAFLS LLVEVDVFSP PGIHWNRSAK G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A3e-251213025132Protein lin-54 homolog
5fd3_B3e-251213025132Protein lin-54 homolog
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.018G039300.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024445729.10.0protein tesmin/TSO1-like CXC 6
TrEMBLA0A2K1WVJ10.0A0A2K1WVJ1_POPTR; Uncharacterized protein
STRINGPOPTR_0018s00600.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-69Tesmin/TSO1-like CXC domain-containing protein