PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.018G038100.1 | ||||||||
Common Name | POPTR_0018s00700g, RAP2L15 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ERF | ||||||||
Protein Properties | Length: 156aa MW: 17247.5 Da PI: 7.9355 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 66 | 7.5e-21 | 14 | 64 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +ykGVr +k +g+WvAeIr p++ r r++lg++ taeeAa+a++aa ++l+g+ Potri.018G038100.1 14 RYKGVRMRK-WGKWVAEIRQPNS---RDRIWLGSYNTAEEAARAYDAAVLCLRGP 64 69*****99.**********933...5*************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 9.3E-30 | 14 | 72 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.603 | 14 | 71 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-22 | 14 | 73 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.1E-14 | 14 | 63 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.9E-33 | 14 | 77 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.85E-28 | 14 | 71 | No hit | No description |
PRINTS | PR00367 | 5.8E-10 | 15 | 26 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.8E-10 | 37 | 53 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 156 aa Download sequence Send to blast |
MVRERRERGD DSGRYKGVRM RKWGKWVAEI RQPNSRDRIW LGSYNTAEEA ARAYDAAVLC 60 LRGPSATFHF PTNIPEIPAM TDQVLSPMQI REVASRHARR GSTVEPAERI VGPGLCEVSS 120 GRSGEVYLGG GENMEECLEG IFSGAYCQTP GVWTV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 9e-17 | 9 | 71 | 9 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.018G038100.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF155956 | 0.0 | EF155956.1 Populus trichocarpa RAP2-like protein (RAP2L15) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002324813.2 | 1e-111 | ethylene-responsive transcription factor ERF016 | ||||
Swissprot | Q9C591 | 9e-35 | ERF16_ARATH; Ethylene-responsive transcription factor ERF016 | ||||
TrEMBL | A0A2K1WVJ5 | 1e-110 | A0A2K1WVJ5_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0018s00700.1 | 1e-109 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15296 | 8 | 13 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G21960.1 | 3e-28 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.018G038100.1 |
Entrez Gene | 7458976 |