PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.018G038000.1
Common NamePOPTR_0018s00710g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 1028aa    MW: 112804 Da    PI: 5.045
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.018G038000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.65e-174086148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g W +eEde+l +av+++ g++Wk+Ia+++   Rt+ qc +rwqk+l
  Potri.018G038000.1 40 KGQWKAEEDEILRKAVQRFKGKNWKKIAECFK-DRTDVQCLHRWQKVL 86
                        799****************************9.************986 PP
2Myb_DNA-binding65.97.6e-2192138148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         +g+W++eEde+++++v+++G++ W+tIa++++ gR +kqc++rw+++l
  Potri.018G038000.1  92 KGPWSKEEDEIIIELVNKYGPKKWSTIAQHLP-GRIGKQCRERWHNHL 138
                         79******************************.*************97 PP
3Myb_DNA-binding44.82.9e-14144186145
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                         + +WT++E+  l++a++ +G++ W+   + ++ gRt++ +k++w+
  Potri.018G038000.1 144 KEAWTQQEEVALIRAHQIYGNR-WAELTKFLP-GRTDNAIKNHWN 186
                         579*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.753586IPR017930Myb domain
SuperFamilySSF466898.61E-153792IPR009057Homeodomain-like
SMARTSM007178.8E-143988IPR001005SANT/Myb domain
PfamPF002492.6E-144086IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-224297IPR009057Homeodomain-like
CDDcd001677.30E-134386No hitNo description
PROSITE profilePS5129433.52187142IPR017930Myb domain
SuperFamilySSF466892.36E-3189185IPR009057Homeodomain-like
SMARTSM007176.5E-2091140IPR001005SANT/Myb domain
PfamPF002492.8E-1992138IPR001005SANT/Myb domain
CDDcd001671.89E-1794138No hitNo description
Gene3DG3DSA:1.10.10.607.5E-2998142IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.2E-20143193IPR009057Homeodomain-like
PROSITE profilePS5129418.483143193IPR017930Myb domain
SMARTSM007171.8E-14143191IPR001005SANT/Myb domain
PfamPF002492.2E-12144187IPR001005SANT/Myb domain
CDDcd001675.56E-11146186No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1028 aa     Download sequence    Send to blast
MESSDRLISA PLDGLVSDRI PRPPKLLHGR TSGPARRSTK GQWKAEEDEI LRKAVQRFKG  60
KNWKKIAECF KDRTDVQCLH RWQKVLNPEL VKGPWSKEED EIIIELVNKY GPKKWSTIAQ  120
HLPGRIGKQC RERWHNHLNP AINKEAWTQQ EEVALIRAHQ IYGNRWAELT KFLPGRTDNA  180
IKNHWNSSVK KKLDSYVASG LLEQFQSSPL AGHQTLSLPS SSSRLHSSGD DNAQRGGSEA  240
EDISECSQES TMVGCSQSAG DQGIAVFHTR EEFQFAEESG PRKEQSSSPA SCSEQYYIPE  300
MPCELGGSSN FLQQSFSHNT LTSANSDYQF ELQELPNIST LELRQESSGL PTHCITANES  360
HELVNDPFQT SIGLGAPTSM GNIAASSAQS GQIFVSDDEC CRILFSEAAN CEIFSSGNIT  420
KDSNVADLGG DMDSSLPQSP NIQISETERS TSQSFCPPRS AILGTSCRQS FLPGSSLHSA  480
DDNKPVYGRE PNPLMVQSFG TLEQQFISSI HDSFIYTIDA INSSCDNGTD NTELQEKPYL  540
KEPSKLVPVN TFPSVSDTIS SCAADEKPNV HAEQEAGGLC YEPPRFPSLD MPFLSCDLVQ  600
SGSDMQQEYS PLGIRQLMMS SMNCITPFRL WDSPSRDGSP DAVLKSAAKT FTGTPSILKK  660
RNRDLLSPLS DRRVDKKLEI DMASNLSKDF SCLDVMFDES ETHNRSSLLP PSSNQEKNHE  720
SSGEDKENLD PALEGAGEFC GNTKDNVKQG TGDSDARSKV HSDASVQQSS GVLSEENTNH  780
LLFSPDQLGF KADRAFGPSA RTPRNLYRKI LGTLSEQASG SESSFGNPCM IFSPTSCKKN  840
HENHIIESTS IQSIPSSAPS ENMPDNSGNN AGTGNFGIFG DTPFKRSIES PSAWKSPWFI  900
NSFVPGPRID TEISIEDIGY FMSPGDRSYD AIALMKQLSE HTASAYADAL EVLGKDTPES  960
MLKERRHSND QNGDQENRSH LASNVLTECR TLDFSECGTP GKLTENGKSS SAISFSSPSA  1020
YLLKGCR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C6e-70401936159MYB PROTO-ONCOGENE PROTEIN
1h89_C6e-70401936159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.018G038000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002324814.20.0transcription factor MYB3R-1 isoform X1
TrEMBLA0A3N7H8D30.0A0A3N7H8D3_POPTR; Uncharacterized protein
STRINGPOPTR_0018s00710.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37273362
Representative plantOGRP9448613
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.20.0Homeodomain-like protein