PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.018G021300.2 | ||||||||
Common Name | POPTR_0018s02330g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ARR-B | ||||||||
Protein Properties | Length: 662aa MW: 72503.2 Da PI: 6.3304 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 61 | 2.4e-19 | 199 | 243 | 1 | 46 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehv 46 kpr++W+ eLH++Fv av+qL G +kA+Pk+il+lm+v+ Lt+e+ Potri.018G021300.2 199 KPRVVWSVELHRKFVAAVNQL-GVDKAVPKKILDLMNVEKLTRENK 243 79*******************.*********************985 PP | |||||||
2 | Response_reg | 75.5 | 2e-25 | 21 | 129 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalea 89 vl vdD+p+ + ll+++l++ +y +v++++++ al++l+e++ +Dl++ D+ mp+mdG++ll+ e++lp+i+++a+g+++++ + Potri.018G021300.2 21 VLAVDDDPTCLLLLETLLRRCQY-NVTTTSQAITALRMLRENKnkFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSANGDPKLVMKG 109 799********************.***************888888*******************87754.558****************** PP HHTTESEEEESS--HHHHHH CS Response_reg 90 lkaGakdflsKpfdpeelvk 109 + Ga +l Kp+ +eel + Potri.018G021300.2 110 ITHGACYYLLKPVRIEELKT 129 *****************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF52172 | 2.56E-35 | 18 | 143 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 1.7E-41 | 18 | 156 | No hit | No description |
SMART | SM00448 | 1.4E-31 | 19 | 131 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 41.991 | 20 | 135 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 9.3E-23 | 21 | 130 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 1.00E-22 | 22 | 135 | No hit | No description |
SuperFamily | SSF46689 | 1.18E-11 | 196 | 250 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.0E-19 | 196 | 250 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.2E-15 | 199 | 242 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 662 aa Download sequence Send to blast |
MTVEQGIGDS NIDQFPIGMR VLAVDDDPTC LLLLETLLRR CQYNVTTTSQ AITALRMLRE 60 NKNKFDLVIS DVHMPDMDGF KLLELVGLEM DLPVIMLSAN GDPKLVMKGI THGACYYLLK 120 PVRIEELKTI WQHVIRRKKS DNKDRNSSDN RDKPNQGSSE AVPDQKLNKK RKDQNGDEDE 180 DHDEDEDEHE NEDPTTQKKP RVVWSVELHR KFVAAVNQLG VDKAVPKKIL DLMNVEKLTR 240 ENKYRHYLKR ISTVANQQAN MVAALGSSDA SYLQMNSMSV LGLHSLAGSV QFHSTPFRSL 300 QSSGMLDRLN SPAVLGIHGL PSPGVIQLGH VQTAPHTANG LSHFQPVGHR GNNGNILQGM 360 PMPLELDQIQ SNKGVNYIPE LPTHLDDTAS FPVSSGSTDM KIIAGSSNSP FVGVSNKHLM 420 LEGHGQGLQD GQKSGKQSSL SAGSLNPGYS SHFPDHGRCN DNWSNAVPSN GAQSDSFTLN 480 DYFKQSTLHP SAIRDRMSTM ALQSRNNPCD VSSVSTLPMH LQDSKADLPC RVGVATVSSN 540 AGQLINNGSL GWDDRRQDDP YHSNGLSNSI NSAFPINGNG SPNGFNLDPN NLFFQRTTSF 600 ISTGPSNFVD TSLMKHNEVE CSAMETLVRS KDGYLLGQEK PQDSSVSNNF GSLEDLPTIL 660 G* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 1e-19 | 195 | 252 | 1 | 64 | ARR10-B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.018G021300.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FN908144 | 0.0 | FN908144.1 Populus x canadensis mRNA for putative B-type response regulator 22 (rr22 gene), cultivar Dorskamp. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024446133.1 | 0.0 | two-component response regulator ORR24 isoform X1 | ||||
Swissprot | A2X1N2 | 1e-140 | ORR24_ORYSI; Two-component response regulator ORR24 | ||||
TrEMBL | A0A2K1WUJ9 | 0.0 | A0A2K1WUJ9_POPTR; Two-component response regulator | ||||
STRING | POPTR_0018s02330.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G25180.1 | 1e-112 | response regulator 12 |
Link Out ? help Back to Top | |
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Phytozome | Potri.018G021300.2 |
Entrez Gene | 7458409 |