PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.018G021300.1 | ||||||||
Common Name | POPTR_0018s02330g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ARR-B | ||||||||
Protein Properties | Length: 675aa MW: 73910.8 Da PI: 6.3721 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 88.5 | 6.2e-28 | 199 | 252 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ eLH++Fv av+qL G +kA+Pk+il+lm+v+ Lt+e+v+SHLQkYR Potri.018G021300.1 199 KPRVVWSVELHRKFVAAVNQL-GVDKAVPKKILDLMNVEKLTRENVASHLQKYRH 252 79*******************.********************************6 PP | |||||||
2 | Response_reg | 75.4 | 2.1e-25 | 21 | 129 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalea 89 vl vdD+p+ + ll+++l++ +y +v++++++ al++l+e++ +Dl++ D+ mp+mdG++ll+ e++lp+i+++a+g+++++ + Potri.018G021300.1 21 VLAVDDDPTCLLLLETLLRRCQY-NVTTTSQAITALRMLRENKnkFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSANGDPKLVMKG 109 799********************.***************888888*******************87754.558****************** PP HHTTESEEEESS--HHHHHH CS Response_reg 90 lkaGakdflsKpfdpeelvk 109 + Ga +l Kp+ +eel + Potri.018G021300.1 110 ITHGACYYLLKPVRIEELKT 129 *****************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF036392 | 1.1E-158 | 1 | 671 | IPR017053 | Response regulator B-type, plant |
Gene3D | G3DSA:3.40.50.2300 | 1.7E-41 | 18 | 156 | No hit | No description |
SuperFamily | SSF52172 | 2.7E-35 | 18 | 143 | IPR011006 | CheY-like superfamily |
SMART | SM00448 | 1.4E-31 | 19 | 131 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 41.991 | 20 | 135 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 9.5E-23 | 21 | 130 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 9.68E-23 | 22 | 135 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-29 | 196 | 257 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.367 | 196 | 255 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.72E-19 | 196 | 256 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.5E-24 | 199 | 252 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.1E-7 | 201 | 251 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 675 aa Download sequence Send to blast |
MTVEQGIGDS NIDQFPIGMR VLAVDDDPTC LLLLETLLRR CQYNVTTTSQ AITALRMLRE 60 NKNKFDLVIS DVHMPDMDGF KLLELVGLEM DLPVIMLSAN GDPKLVMKGI THGACYYLLK 120 PVRIEELKTI WQHVIRRKKS DNKDRNSSDN RDKPNQGSSE AVPDQKLNKK RKDQNGDEDE 180 DHDEDEDEHE NEDPTTQKKP RVVWSVELHR KFVAAVNQLG VDKAVPKKIL DLMNVEKLTR 240 ENVASHLQKY RHYLKRISTV ANQQANMVAA LGSSDASYLQ MNSMSVLGLH SLAGSVQFHS 300 TPFRSLQSSG MLDRLNSPAV LGIHGLPSPG VIQLGHVQTA PHTANGLSHF QPVGHRGNNG 360 NILQGMPMPL ELDQIQSNKG VNYIPELPTH LDDTASFPVS SGSTDMKIIA GSSNSPFVGV 420 SNKHLMLEGH GQGLQDGQKS GKQSSLSAGS LNPGYSSHFP DHGRCNDNWS NAVPSNGAQS 480 DSFTLNDYFK QSTLHPSAIR DRMSTMALQS RNNPCDVSSV STLPMHLQDS KADLPCRVGV 540 ATVSSNAGQL INNGSLGWDD RRQDDPYHSN GLSNSINSAF PINGNGSPNG FNLDPNNLFF 600 QRTTSFISTG PSNFVDTSLM KHNEVECSAM ETLVRSKDGY LLGQEKPQDS SVSNNFGSLE 660 DLVSVMINQP TILG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 5e-26 | 195 | 258 | 1 | 64 | ARR10-B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}. | |||||
UniProt | Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.018G021300.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FN908144 | 0.0 | FN908144.1 Populus x canadensis mRNA for putative B-type response regulator 22 (rr22 gene), cultivar Dorskamp. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024446133.1 | 0.0 | two-component response regulator ORR24 isoform X1 | ||||
Swissprot | A2X1N2 | 1e-147 | ORR24_ORYSI; Two-component response regulator ORR24 | ||||
Swissprot | Q6H805 | 1e-147 | ORR24_ORYSJ; Two-component response regulator ORR24 | ||||
TrEMBL | A0A2K1WUJ9 | 0.0 | A0A2K1WUJ9_POPTR; Two-component response regulator | ||||
STRING | POPTR_0018s02330.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF956 | 34 | 112 | Representative plant | OGRP292 | 17 | 120 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G25180.1 | 1e-119 | response regulator 12 |
Link Out ? help Back to Top | |
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Phytozome | Potri.018G021300.1 |
Entrez Gene | 7458409 |
Publications ? help Back to Top | |||
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