PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.018G019800.1
Common NamePOPTR_0018s02470g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 321aa    MW: 35570 Da    PI: 9.39
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.018G019800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.87e-31164223159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         ++Dgy+WrKYGqK+ ++++ pr+YY+C++a +Cpvkkkv+rsaedp++++ tYegeHnh 
  Potri.018G019800.1 164 VKDGYQWRKYGQKVTRDNPSPRAYYKCSFApSCPVKKKVQRSAEDPSILVATYEGEHNHA 223
                         58***************************99****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.8E-29157223IPR003657WRKY domain
PROSITE profilePS5081126.475159225IPR003657WRKY domain
SuperFamilySSF1182901.7E-25162223IPR003657WRKY domain
SMARTSM007742.7E-35164224IPR003657WRKY domain
PfamPF031063.0E-25165222IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002237Biological Processresponse to molecule of bacterial origin
GO:0002238Biological Processresponse to molecule of fungal origin
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009611Biological Processresponse to wounding
GO:0009623Biological Processresponse to parasitic fungus
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0031347Biological Processregulation of defense response
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:1990841Molecular Functionpromoter-specific chromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MESSWVNTSL DLNINPFKHV NESTQVQKIK KFEGYSTRVL EQKLQVKNED GVGVLVEELT  60
RMSSENKKLT EMLGVVCDNY MALQKHLADL VSKNSVKEIS TPISSRKRKA ESEDYSIVIN  120
GISGGNAESS SIDEESSKRP KENLKSKISR TYFRTSESDA SLVVKDGYQW RKYGQKVTRD  180
NPSPRAYYKC SFAPSCPVKK KVQRSAEDPS ILVATYEGEH NHASHSQHEP SLGSSHGSNF  240
GPIPTQSPIR SSAPTVTLDL IQSGRHGDTA TKTVQEMEVP ALQKILVQQM ASSLTRDPNF  300
TAALAAAISG RFNQTRMEKW *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-211552221174Probable WRKY transcription factor 4
2lex_A2e-211552221174Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.81980.0bud| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.018G019800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006371762.10.0probable WRKY transcription factor 40
TrEMBLU5FH190.0U5FH19_POPTR; Uncharacterized protein
STRINGPOPTR_0018s02470.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97334115
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.14e-88WRKY DNA-binding protein 40