PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.018G019000.2
Common NamePOPTR_0018s02550g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 449aa    MW: 49553.7 Da    PI: 9.1364
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.018G019000.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY79.92.7e-25126183259
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          DgynWrKYG+K vkgs++ rsYYrC +++C +kkkv+++++ ++vv+++Y g+H+h+
  Potri.018G019000.2 126 ADGYNWRKYGRKLVKGSKNLRSYYRCVYSSCYAKKKVQHCDRSGRVVDVVYIGDHHHD 183
                         6********************************************************7 PP
2WRKY93.12.1e-29312369259
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         +Dgy+WrKYGqK+ kg+   rsYYrC+s+ Cp++k+ver+++d + +++tYeg+H+h+
  Potri.018G019000.2 312 NDGYRWRKYGQKMLKGNSLVRSYYRCSSSACPAHKHVERATDDASSTTVTYEGKHDHD 369
                         8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-23120185IPR003657WRKY domain
SuperFamilySSF1182903.14E-22123185IPR003657WRKY domain
SMARTSM007741.7E-25125184IPR003657WRKY domain
PROSITE profilePS5081121.471127185IPR003657WRKY domain
PfamPF031063.6E-20127182IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.3E-30296371IPR003657WRKY domain
SuperFamilySSF1182907.19E-25305371IPR003657WRKY domain
PROSITE profilePS5081128.311306371IPR003657WRKY domain
SMARTSM007744.0E-31311370IPR003657WRKY domain
PfamPF031063.3E-23312368IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MQEQNKDPKE DSNIGFNCDC SSFSQSLKKV ISNSPVLGFQ GGNEMFQQDA CAGTKPEADR  60
VQLEHQAECA NTSSEVLSLT PAVISVPYSA SVPQKPRSMR ALGLVINQQK SDCETRHPHV  120
VESPPADGYN WRKYGRKLVK GSKNLRSYYR CVYSSCYAKK KVQHCDRSGR VVDVVYIGDH  180
HHDPPQKKRI RVVSSAKHTI GSQVVDPSVQ KLVGLDISVC SADGRHSSLH VPESEQQSSS  240
ISNGNAGARI KEKSDDEAES KRWQWDPNKM APVGLLVLRI KERSAPCSVP VLKTMKEPEI  300
IRHTVSDDGS SNDGYRWRKY GQKMLKGNSL VRSYYRCSSS ACPAHKHVER ATDDASSTTV  360
TYEGKHDHDM PAPKKRQCSE NRLISPAAST DDARCKKNRS LSSRKPSSRC SVDGEVDLMG  420
EKISKLGGEQ ALESAQTLLS IGIDLRPR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-23300371374WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.018G019000.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1796070.0EF179607.1 (Populus tomentosa x P. bolleana) x P. tomentosa putative WRKY transcription factor 02 gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024446284.10.0probable WRKY transcription factor 20 isoform X1
TrEMBLA0A2K1WUF60.0A0A2K1WUF6_POPTR; Uncharacterized protein
STRINGPOPTR_0018s02550.11e-142(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30935.11e-44WRKY DNA-binding protein 32