PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.018G019000.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 467aa    MW: 51112.3 Da    PI: 9.0777
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.018G019000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY79.82.9e-25126183259
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          DgynWrKYG+K vkgs++ rsYYrC +++C +kkkv+++++ ++vv+++Y g+H+h+
  Potri.018G019000.1 126 ADGYNWRKYGRKLVKGSKNLRSYYRCVYSSCYAKKKVQHCDRSGRVVDVVYIGDHHHD 183
                         6********************************************************7 PP
2WRKY932.2e-29330387259
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         +Dgy+WrKYGqK+ kg+   rsYYrC+s+ Cp++k+ver+++d + +++tYeg+H+h+
  Potri.018G019000.1 330 NDGYRWRKYGQKMLKGNSLVRSYYRCSSSACPAHKHVERATDDASSTTVTYEGKHDHD 387
                         8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-23120185IPR003657WRKY domain
SuperFamilySSF1182903.27E-22123185IPR003657WRKY domain
SMARTSM007741.7E-25125184IPR003657WRKY domain
PROSITE profilePS5081121.471127185IPR003657WRKY domain
PfamPF031063.8E-20127182IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.7E-30314389IPR003657WRKY domain
SuperFamilySSF1182907.72E-25323389IPR003657WRKY domain
PROSITE profilePS5081128.311324389IPR003657WRKY domain
SMARTSM007744.0E-31329388IPR003657WRKY domain
PfamPF031063.5E-23330386IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MQEQNKDPKE DSNIGFNCDC SSFSQSLKKV ISNSPVLGFQ GGNEMFQQDA CAGTKPEADR  60
VQLEHQAECA NTSSEVLSLT PAVISVPYSA SVPQKPRSMR ALGLVINQQK SDCETRHPHV  120
VESPPADGYN WRKYGRKLVK GSKNLRSYYR CVYSSCYAKK KVQHCDRSGR VVDVVYIGDH  180
HHDPPQKKRI RVVSSAKHTI GSQVVDPSVQ KLVGLDISVC SADGRHSSLH VPESEQQSSS  240
ISNGNAGARI KEKSDDEAES KRCSGSSAVG PQQNGSCGIA STQVQEKHGA EPRLKIRIKE  300
RSAPCSVPVL KTMKEPEIIR HTVSDDGSSN DGYRWRKYGQ KMLKGNSLVR SYYRCSSSAC  360
PAHKHVERAT DDASSTTVTY EGKHDHDMPA PKKRQCSENR LISPAASTDD ARCKKNRSLS  420
SRKPSSRCSV DGEVDLMGEK ISKLGGEQAL ESAQTLLSIG IDLRPR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-23318389374WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.018G019000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024446284.10.0probable WRKY transcription factor 20 isoform X1
TrEMBLA0A2K1WUF60.0A0A2K1WUF6_POPTR; Uncharacterized protein
STRINGPOPTR_0018s02550.11e-142(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16159610
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30935.19e-44WRKY DNA-binding protein 32