PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.018G013800.1
Common NamePOPTR_0018s03110g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family CO-like
Protein Properties Length: 351aa    MW: 37956.1 Da    PI: 5.4578
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.018G013800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box27.95e-09447441
            zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                        + C+ +++  ++lfC+ ++ +lC +C +++H        H +v+
  Potri.018G013800.1  4 KLCDSCKSATATLFCRADSAFLCISCDSKIHAAnklasrHARVS 47
                        58*****************************6567777777665 PP
2zf-B_box29.61.4e-094791442
            zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                         +C+ +e+ ++++ C+ +   lC +C   +H+       H++vp+
  Potri.018G013800.1 47 SVCEVCEQAPAHFTCKADAAALCVTCDRDIHSAnplasrHERVPI 91
                        68*****************************66999999*99997 PP
3CCT70.34.7e-24287330144
                 CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                         Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++
  Potri.018G013800.1 287 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 330
                         9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003362.5E-13148IPR000315B-box-type zinc finger
PROSITE profilePS5011911.064148IPR000315B-box-type zinc finger
PfamPF006431.2E-6447IPR000315B-box-type zinc finger
CDDcd000212.04E-8548No hitNo description
PROSITE profilePS5011911.1634491IPR000315B-box-type zinc finger
PfamPF006436.4E-84791IPR000315B-box-type zinc finger
CDDcd000213.94E-94891No hitNo description
SMARTSM003361.6E-114991IPR000315B-box-type zinc finger
PfamPF062035.2E-18287329IPR010402CCT domain
PROSITE profilePS5101716.787287329IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009416Biological Processresponse to light stimulus
GO:0009909Biological Processregulation of flower development
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MASKLCDSCK SATATLFCRA DSAFLCISCD SKIHAANKLA SRHARVSVCE VCEQAPAHFT  60
CKADAAALCV TCDRDIHSAN PLASRHERVP ITPFFDSSST VHGGGEAVNL LEDRYFDEVD  120
GGRGDVSREE AEAESWLLPN PGGGTTKGVD SMDLNTGQYV FGSEMDPYLD LDPYVDPKVE  180
VQEQNSSGTT DGVVPVQSNK LGFQSPALVN DHCCYELDFS TGSKSFGGGY GYNSLSQSVS  240
SSSLDVGVVP DGSGSTLTDI SNPYCSRSVC NGMESANQTV QLSAVDREAR VLRYREKRKN  300
RKFEKTIRYA SRKAYAETRP RIKGRFAKRT DTEVEVDRSS LYGFGVVPSF *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.39760.0bud| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.018G013800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1485090.0EF148509.1 Populus trichocarpa x Populus deltoides clone WS0131_O05 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002324936.10.0zinc finger protein CONSTANS-LIKE 4
SwissprotQ940T91e-131COL4_ARATH; Zinc finger protein CONSTANS-LIKE 4
TrEMBLB9ILB00.0B9ILB0_POPTR; Co-like family protein
STRINGPOPTR_0018s03110.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13023493
Representative plantOGRP6911767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24930.11e-120CONSTANS-like 4