PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.018G005300.1
Common NamePOPTR_0018s03770g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 392aa    MW: 43469.1 Da    PI: 5.9374
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.018G005300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.93.1e-151461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+ Ed+ l d+ k +G g W+ I ++ g++R++k+c++rw +yl
  Potri.018G005300.1 14 KGAWTPLEDKMLMDYLKIHGEGKWSNIVKETGLKRCGKSCRLRWMNYL 61
                        79********************************************97 PP
2Myb_DNA-binding53.26.9e-1767110146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rg+++++E++l+++++k+lG++ W++Ia +++ gRt++++k++w++
  Potri.018G005300.1  67 RGNFSEDEEDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWHT 110
                         89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.204961IPR017930Myb domain
SuperFamilySSF466893.15E-2912108IPR009057Homeodomain-like
SMARTSM007171.9E-131363IPR001005SANT/Myb domain
PfamPF002498.8E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-231568IPR009057Homeodomain-like
CDDcd001677.06E-111661No hitNo description
PROSITE profilePS5129426.22762116IPR017930Myb domain
SMARTSM007176.8E-1666114IPR001005SANT/Myb domain
PfamPF002492.8E-1567110IPR001005SANT/Myb domain
CDDcd001674.49E-1269112No hitNo description
Gene3DG3DSA:1.10.10.601.8E-2469115IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MGRKPGCSKD GLNKGAWTPL EDKMLMDYLK IHGEGKWSNI VKETGLKRCG KSCRLRWMNY  60
LRPNIKRGNF SEDEEDLIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWHT TIAKKAQHRQ  120
LRGQPKVDRK QIASGSQNGA ASNLKNQSTI ESQCTTGMVA ATTTLQENTA QDHQDSIAIP  180
KSTNSDLQLD MPKTYENEPS SKGSQNGAAS NFKNQSTIES QCTTGVVAAT PTLQENTAQD  240
HQDSIAMAQS TNSNLQYDIP KTNENESSSK GLASGEDDNS SNIMMYYDYM EDFSKILDSD  300
FTKFSDVHDI ISTDHHSNNT IEVNGDHHGV SINGCKSRET AEFPGKLVES DHWSSNKCIQ  360
ADQGFDFMSL LSFLDSTDDE WTADALGTKV L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-261211525127MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.018G005300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006371801.10.0myb-related protein 308
TrEMBLB9NA030.0B9NA03_POPTR; Uncharacterized protein
STRINGPOPTR_0018s03770.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1659238
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.16e-58myb domain protein 3