PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.018G003800.1

Common Name

POPTR_0018s03910g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

NAC

Protein Properties

Length: 348aa MW: 38677.8 Da PI: 9.1683

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.018G003800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	181.3	2.4e-56	28	155	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGfrFhPtdeel+++yL++k+++ ++++ ++i +vd++k+ePwdLp k+k +ekewyfFs rd+ky+tg r+nrat++gyWk+tgkdke Potri.018G003800.1 28 LPPGFRFHPTDEELITYYLQNKISDADFSC-RAIGDVDLNKCEPWDLPGKAKMGEKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKE 117 79**************************.89***********99999********************************** PP NAM 92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++ +++lvg+kktLvfy+grap+gekt+Wvmheyr+ Potri.018G003800.1 118 IFNSvTSQLVGMKKTLVFYRGRAPRGEKTNWVMHEYRV 155 9989999***************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.22E-64	25	176	IPR003441	NAC domain
PROSITE profile	PS51005	60.485	28	176	IPR003441	NAC domain
Pfam	PF02365	2.9E-29	29	155	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence Send to blast
MQNPISDKGK KQIGKEKDME GDAKEETLPP GFRFHPTDEE LITYYLQNKI SDADFSCRAI 60 GDVDLNKCEP WDLPGKAKMG EKEWYFFSLR DRKYPTGVRT NRATNTGYWK TTGKDKEIFN 120 SVTSQLVGMK KTLVFYRGRA PRGEKTNWVM HEYRVHAKAG FRASKDEWVV CRIFQKSAGA 180 KKYPSNQSRA GNPLYNLEIG PSVMPSQMMQ AADNFQLPIG RNYMMSNAEL QAELARVFRA 240 GGSTGINLPM QSPLNNSYSV GGGAGGCFTV SGLNLNLGGA TSQPVLRPMP PPVMNQHDVT 300 PSMMTSTSSY AVEQAAYGAE MNNANGPSNR FMGMQQCMDL ENYWPAY*

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence Send to blast

MQNPISDKGK KQIGKEKDME GDAKEETLPP GFRFHPTDEE LITYYLQNKI SDADFSCRAI  60
GDVDLNKCEP WDLPGKAKMG EKEWYFFSLR DRKYPTGVRT NRATNTGYWK TTGKDKEIFN  120
SVTSQLVGMK KTLVFYRGRA PRGEKTNWVM HEYRVHAKAG FRASKDEWVV CRIFQKSAGA  180
KKYPSNQSRA GNPLYNLEIG PSVMPSQMMQ AADNFQLPIG RNYMMSNAEL QAELARVFRA  240
GGSTGINLPM QSPLNNSYSV GGGAGGCFTV SGLNLNLGGA TSQPVLRPMP PPVMNQHDVT  300
PSMMTSTSSY AVEQAAYGAE MNNANGPSNR FMGMQQCMDL ENYWPAY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-57	27	182	16	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-57	27	182	16	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-57	27	182	16	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-57	27	182	16	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-57	27	182	19	174	NAC domain-containing protein 19
3swm_B	2e-57	27	182	19	174	NAC domain-containing protein 19
3swm_C	2e-57	27	182	19	174	NAC domain-containing protein 19
3swm_D	2e-57	27	182	19	174	NAC domain-containing protein 19
3swp_A	2e-57	27	182	19	174	NAC domain-containing protein 19
3swp_B	2e-57	27	182	19	174	NAC domain-containing protein 19
3swp_C	2e-57	27	182	19	174	NAC domain-containing protein 19
3swp_D	2e-57	27	182	19	174	NAC domain-containing protein 19
4dul_A	2e-57	27	182	16	171	NAC domain-containing protein 19
4dul_B	2e-57	27	182	16	171	NAC domain-containing protein 19
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00277	DAP	Transfer from AT2G24430	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.018G003800.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024445785.1	0.0	NAC domain-containing protein 92 isoform X3
TrEMBL	A0A2K1WTU1	0.0	A0A2K1WTU1_POPTR; Uncharacterized protein
STRING	POPTR_0018s03910.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5073	32	53
Representative plant	OGRP17	15	800

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24430.2	1e-119	NAC domain containing protein 38

Link Out ? help Back to Top
Phytozome	Potri.018G003800.1
Entrez Gene	18107554