PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.018G002800.1

Common Name

POPTR_0018s04010g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

Trihelix

Protein Properties

Length: 320aa MW: 36550.3 Da PI: 5.1074

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.018G002800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	33.1	1.5e-10	43	120	1	82
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyf 82 +Wt ++ l L++ +e++ +++ + ++W+ + ++ + g++ + qC++kw++l +y +ik+++k+ +s+s ++ Potri.018G002800.1 43 EWTAKQALILVNEIAAVEKDCSKAVSTNQKWKIIVGNCVALGVTHTLSQCRSKWNSLVIEYNQIKKWDKESESRSD----FY 120 5********************************************************************9644443....44 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	5.3E-9	42	123	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009506	Cellular Component	plasmodesma

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence Send to blast
MEATQSITAI NNKKRKKGNQ DCKNSNSSRV LSTPRTRSQV SPEWTAKQAL ILVNEIAAVE 60 KDCSKAVSTN QKWKIIVGNC VALGVTHTLS QCRSKWNSLV IEYNQIKKWD KESESRSDFY 120 WSLGCERRKE FGLPENFDDE LFKAIDDYMW SQKEQLDTDP DTDLQKADLL DVIANLERYV 180 EENHQTCCTK EKPQTIPAEE ELHEIQVKEK PQKRLRKEKP QIGNGDEKPK IYSGRKKMPS 240 TEDMEQMMVE KLSENAEMIQ AVVNGNLPEM ADLEAADSNN IEGFKTDLIR SQGDKLIACL 300 ENIVNTMRQF PWLLQDATS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	12	16	KKRKK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.018G002800.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024445560.1	0.0	uncharacterized protein LOC18107564 isoform X4
TrEMBL	A0A3N7G5K7	1e-131	A0A3N7G5K7_POPTR; Uncharacterized protein
STRING	POPTR_0018s04010.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6732	26	33
Representative plant	OGRP7482	13	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31270.1	2e-53	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	Potri.018G002800.1
Entrez Gene	18107564