PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.017G149000.1
Common NamePOPTR_0017s00960g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 413aa    MW: 45622.7 Da    PI: 5.9771
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.017G149000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.58.6e-31222280259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         +D ++WrKYGqK++kgs++pr+YYrC+s+ gC ++k+vers++dp+++++ Y+g+H+h+
  Potri.017G149000.1 222 NDVWAWRKYGQKPIKGSPYPRNYYRCSSSkGCAARKQVERSNTDPNMFIVSYTGDHTHP 280
                         8**************************998****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.5E-31208282IPR003657WRKY domain
SuperFamilySSF1182909.02E-27215282IPR003657WRKY domain
PROSITE profilePS5081133.373216282IPR003657WRKY domain
SMARTSM007743.7E-37221281IPR003657WRKY domain
PfamPF031065.5E-26222280IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MAEGQDWDLY AIVRSCTSAT TNRNGSSNTS ENLENPFECL ASLTFDDDDD QEFNPFSLPN  60
LAVQPTNNDG LQELQDSYKP FLPSYTASGL QGNNDNIPSS SSISDFGVIF SGQNPPQLAH  120
QQQQQLQQQN HYHHHHHQQQ QQSPPPPSTS VSISPRFNNS QQQPQHIVQQ QQNQRRQLHQ  180
LVTSTSSMFP LRTTQSQTPR SRKKKSNQKK LVLHVTAENL SNDVWAWRKY GQKPIKGSPY  240
PRNYYRCSSS KGCAARKQVE RSNTDPNMFI VSYTGDHTHP RPTHRNSLAG STRNKVQQAV  300
QKPEEKESEQ PNISADKGLC SSPLSATSLS PRTPLSAPID HAETAGNDQE AKIENLEGGH  360
GLMGSDDDCD NDINDDCDDD LLIPNMALNE DFIKGFQELV GASEGGGGGS SK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B1e-192232831880Disease resistance protein RRS1
5w3x_D1e-192232831880Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.017G149000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006372370.10.0probable WRKY transcription factor 27
TrEMBLB9MX640.0B9MX64_POPTR; Uncharacterized protein
STRINGPOPTR_0017s00960.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67943249
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52830.17e-59WRKY DNA-binding protein 27