PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.017G139500.1
Common NamePOPTR_0017s02020g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 677aa    MW: 76732.8 Da    PI: 6.1871
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.017G139500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM179.49.4e-5651321128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                         lppGfrFhPtdeelv +yLk+k++g+k+el e+i+evd+yk+ePwdLp k  + +++ ewyfFs+rd+ky++g+r+nratk+gyWkatgkd
  Potri.017G139500.1   5 LPPGFRFHPTDEELVAYYLKRKINGHKIEL-EIIPEVDLYKCEPWDLPgKsLLPSKDLEWYFFSPRDRKYPNGSRTNRATKAGYWKATGKD 94 
                         79****************************.99***************6434555777********************************* PP

                 NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         ++v s + ++vg+kktLv+y+grap+g +t Wvmheyrl
  Potri.017G139500.1  95 RKVNS-QMRAVGMKKTLVYYRGRAPHGARTGWVMHEYRL 132
                         *****.9999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.45E-633155IPR003441NAC domain
PROSITE profilePS5100560.8995155IPR003441NAC domain
PfamPF023655.4E-306132IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 677 aa     Download sequence    Send to blast
MAPVLPPGFR FHPTDEELVA YYLKRKINGH KIELEIIPEV DLYKCEPWDL PGKSLLPSKD  60
LEWYFFSPRD RKYPNGSRTN RATKAGYWKA TGKDRKVNSQ MRAVGMKKTL VYYRGRAPHG  120
ARTGWVMHEY RLDERECETN SGLQDAYALC RVSKKTTTIP KIGEHYVSTT YRMPCEHSSS  180
IELYSDHGRS EEFESSNYPM HKNVDTCSTS YRAVGSPLDI SESRNGKWAP SMDGFGMSPS  240
QFPSHSTIPY PPSKVNMALE CARLQHRFTL PPLEVEDFPQ VGLADIKVMQ QPFMPESTST  300
HQTDILQEIR SVAHASQELI NQSSFQDTWG GNYATTDHDF TFMDGKNVQH NMLSDMMMNS  360
IRCAEKYWID PNTSSRSIEI SNLDETFKTE RMVENLRWVG MSNNDLEKSF MEETKIVPIE  420
NISSFRSREE HEVRGENVHV DDCMGFNDSE DFSLGFINDE PNDDNFIDEC NVDDLTSSVP  480
SFEVVEDIKV NHGLFVSTRQ ATETFFHQLV PSQTVKIYLN PAVVTSNFSI EKADSTKSYG  540
KETTISTAKE YFVGSKSSVQ YPWRNLARNV VCLIVIILMH CSYLGENVEN GKLMDGFMGS  600
GRVGDEGCCP SKNIKPMMKP AGKLIKWDDN KKEKDLLVTI RGGEGSKFGV FLKKLGLFLT  660
ISFALCTILV NHSMAP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-55516117171NO APICAL MERISTEM PROTEIN
1ut4_B8e-55516117171NO APICAL MERISTEM PROTEIN
1ut7_A8e-55516117171NO APICAL MERISTEM PROTEIN
1ut7_B8e-55516117171NO APICAL MERISTEM PROTEIN
3swm_A1e-54516120174NAC domain-containing protein 19
3swm_B1e-54516120174NAC domain-containing protein 19
3swm_C1e-54516120174NAC domain-containing protein 19
3swm_D1e-54516120174NAC domain-containing protein 19
3swp_A1e-54516120174NAC domain-containing protein 19
3swp_B1e-54516120174NAC domain-containing protein 19
3swp_C1e-54516120174NAC domain-containing protein 19
3swp_D1e-54516120174NAC domain-containing protein 19
4dul_A8e-55516117171NAC domain-containing protein 19
4dul_B8e-55516117171NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00212DAPTransfer from AT1G65910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.017G139500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006372479.20.0NAC domain-containing protein 86
TrEMBLA0A2K1X7R20.0A0A2K1X7R2_POPTR; Uncharacterized protein
STRINGPOPTR_0017s02020.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44213460
Representative plantOGRP87171015
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.11e-157NAC domain containing protein 28