PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.017G134800.1 | ||||||||
Common Name | POPTR_0017s02490g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | C2H2 | ||||||||
Protein Properties | Length: 259aa MW: 27827.7 Da PI: 5.316 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.9 | 0.00034 | 106 | 128 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H Potri.017G134800.1 106 FSCNYCQRKFFSSQALGGHQNAH 128 89*****************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.78E-6 | 104 | 133 | No hit | No description |
PROSITE profile | PS50157 | 11.344 | 106 | 133 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 108 | 128 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MKPIIDLEVE ASSENVSDVS SQVASNLSNQ ETSAGPSNES LTNSSYLKNA IATQSGSETV 60 SLDLKLCFND DELGGRDSMG LSLSSTSESS NDPASRTTAE AIPRVFSCNY CQRKFFSSQA 120 LGGHQNAHKR ERTLAKRAIR MGIFSERYAS LASLPLHGSS FRSLGIKAHS SVHQSFAQPV 180 RPQDISSSAR FDHGYVGLPI FMEDEEAELV WPGSFRQVAV ADDAHQSFVL ARSSNMNFLG 240 ATPSVNSDDS APDLTLKL* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.192 | 0.0 | leaf |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development. {ECO:0000269|PubMed:24808098}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.017G134800.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC209039 | 0.0 | AC209039.1 Populus trichocarpa clone POP009-N17, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006372528.1 | 0.0 | zinc finger protein 4 | ||||
Refseq | XP_024444116.1 | 0.0 | zinc finger protein 4 | ||||
Swissprot | Q39263 | 7e-50 | ZFP4_ARATH; Zinc finger protein 4 | ||||
TrEMBL | U5FH75 | 0.0 | U5FH75_POPTR; C2H2 family protein | ||||
STRING | POPTR_0017s02490.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1323 | 31 | 92 | Representative plant | OGRP82 | 15 | 137 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66140.1 | 2e-51 | zinc finger protein 4 |
Link Out ? help Back to Top | |
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Phytozome | Potri.017G134800.1 |
Entrez Gene | 18106596 |
Publications ? help Back to Top | |||
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