PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.017G128900.1
Common NamePOPTR_0017s02990g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 245aa    MW: 27227.7 Da    PI: 8.9296
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.017G128900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.35.5e-161360148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+W+ +Ed++l+d++k +G g+W++ +   g++R++k+c++rw +yl
  Potri.017G128900.1 13 KGAWSVQEDQKLIDYIKTHGEGCWRSLPMAAGLHRCGKSCRLRWINYL 60
                        79********************************************97 PP
2Myb_DNA-binding53.17.6e-1766111148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg++ ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l
  Potri.017G128900.1  66 RGNFGQDEEDLIIKLHALLGNR-WSLIAGRLP-GRTDNEVKNYWNSHL 111
                         899*******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-22462IPR009057Homeodomain-like
PROSITE profilePS5129415.742860IPR017930Myb domain
SuperFamilySSF466892.93E-2811107IPR009057Homeodomain-like
SMARTSM007171.7E-131262IPR001005SANT/Myb domain
PfamPF002494.9E-141360IPR001005SANT/Myb domain
CDDcd001672.65E-101560No hitNo description
PROSITE profilePS5129425.91761115IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.8E-2663116IPR009057Homeodomain-like
SMARTSM007177.0E-1665113IPR001005SANT/Myb domain
PfamPF002492.4E-1566111IPR001005SANT/Myb domain
CDDcd001672.53E-1168111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MRKPCCDKQG NNKGAWSVQE DQKLIDYIKT HGEGCWRSLP MAAGLHRCGK SCRLRWINYL  60
RPDIKRGNFG QDEEDLIIKL HALLGNRWSL IAGRLPGRTD NEVKNYWNSH LKKKLINMGI  120
DPNNHRLNQI LPRPQTEPAP VLATSTTTGS KNTITTSKPE KSSNDDSDRV SDTASCLEDD  180
YKSLVKQQVA TSGSSNINLD LTIAAPASPG HKTSFGNEQQ NCNWGKTCQV ESEPTSLPTL  240
ILFR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-27131157108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, flower buds, and siliques. {ECO:0000269|PubMed:9839469}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.017G128900.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene, asbscisic acid (ABA), auxin (IAA), and Pseudomonas syringae pv. phaseolica. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP7233920.0KP723392.1 Populus tremula x Populus tremuloides clone INRA 353-38 R2R3 MYB flavonoid repressor protein (MYB182) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006372586.10.0transcription repressor MYB6
SwissprotQ388512e-73MYB6_ARATH; Transcription repressor MYB6
TrEMBLU5FGW10.0U5FGW1_POPTR; Uncharacterized protein
STRINGPOPTR_0017s02990.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26434221
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09460.12e-74myb domain protein 6