PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Potri.017G126000.1 | ||||||||
Common Name | POPTR_0005s14450g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 263aa MW: 29705.8 Da PI: 9.0805 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.2 | 1.6e-17 | 9 | 56 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd ll d+v+++G g+W+ ++++ g++R++k+c++rw++yl Potri.017G126000.1 9 KGAWTREEDILLRDCVEKYGEGRWHQVSSKAGLNRCRKSCRLRWLSYL 56 79*******************************************997 PP | |||||||
2 | Myb_DNA-binding | 45.8 | 1.4e-14 | 62 | 110 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 rg +++E++l+++++++lG++ W++Ia +++ gRt++++k++w++ Potri.017G126000.1 62 RGQYSEDEEDLIIKLHRLLGNRqvkMWSLIAGRLP-GRTANDLKNYWNTN 110 7899*******************************.***********986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 25.781 | 4 | 60 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.21E-26 | 6 | 107 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.6E-16 | 8 | 58 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.3E-16 | 9 | 56 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.0E-22 | 10 | 63 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.30E-11 | 11 | 56 | No hit | No description |
SMART | SM00717 | 5.8E-12 | 61 | 113 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 17.392 | 61 | 115 | IPR017930 | Myb domain |
Pfam | PF00249 | 4.0E-13 | 62 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.1E-20 | 64 | 115 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.02E-9 | 65 | 111 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 263 aa Download sequence Send to blast |
MVSSSGIRKG AWTREEDILL RDCVEKYGEG RWHQVSSKAG LNRCRKSCRL RWLSYLKPGI 60 KRGQYSEDEE DLIIKLHRLL GNRQVKMWSL IAGRLPGRTA NDLKNYWNTN LSKKVVSGTR 120 EAQTKPEPKA ITKANIIKPR PHKFKSLCWL RGKGIPFFNG GFQYGYDLCK PWSTSALSPS 180 DIIEVESMRW ESLLDDKEIS VSSNTGCLRS GSESDQEPIK SLFAEDSAPE GMRIGDVFCE 240 QGQHCWSGNS FDAADLWNLV NT* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-21 | 2 | 115 | 20 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Potri.017G126000.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KP723394 | 0.0 | KP723394.1 Populus tremula x Populus tremuloides clone INRA 353-38 R2R3 MYB transcription factor (MYB117) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024444725.1 | 0.0 | uncharacterized protein LOC18099377 | ||||
Swissprot | Q9FNV9 | 3e-56 | MY113_ARATH; Transcription factor MYB113 | ||||
TrEMBL | A0A2K1X734 | 0.0 | A0A2K1X734_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0005s14450.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31 | 34 | 817 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G66370.1 | 1e-58 | myb domain protein 113 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Potri.017G126000.1 |
Entrez Gene | 18099377 |
Publications ? help Back to Top | |||
---|---|---|---|
|