PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.017G125700.1
Common NamePOPTR_0005s14480g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 273aa    MW: 30744.9 Da    PI: 8.8392
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.017G125700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.28.1e-18956148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+eEd ll ++v+++G g+W+ ++++ g++R++k+c++rw++yl
  Potri.017G125700.1  9 KGAWTEEEDILLRKCVEKYGEGRWHQVPSKTGLNRCRKSCRLRWLNYL 56
                        79********************************************97 PP
2Myb_DNA-binding42.41.7e-1362110147
                         TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 
                         rg ++ +E +l+++++k+lG++    W++Ia +++ gRt++++k++w++ 
  Potri.017G125700.1  62 RGQFSVDEVDLIIRLHKLLGNRqvqMWSLIAGRLP-GRTANDVKNYWNTN 110
                         899********************************.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.793160IPR017930Myb domain
SuperFamilySSF466892.31E-276107IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-22759IPR009057Homeodomain-like
SMARTSM007172.5E-16858IPR001005SANT/Myb domain
PfamPF002498.5E-17956IPR001005SANT/Myb domain
CDDcd001672.69E-121156No hitNo description
Gene3DG3DSA:1.10.10.601.1E-2060115IPR009057Homeodomain-like
PROSITE profilePS5129417.91161115IPR017930Myb domain
SMARTSM007177.1E-1161113IPR001005SANT/Myb domain
PfamPF002492.7E-1262111IPR001005SANT/Myb domain
CDDcd001672.00E-965111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009753Biological Processresponse to jasmonic acid
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MVSLLGVRKG AWTEEEDILL RKCVEKYGEG RWHQVPSKTG LNRCRKSCRL RWLNYLKPNI  60
KRGQFSVDEV DLIIRLHKLL GNRQVQMWSL IAGRLPGRTA NDVKNYWNTN LRKKVVSSTE  120
DAQTKPEAKS ITKDNIIKPR PRNLKNLCWS RAGKGTPYIN VASQYGDDLC QPYSTTALPP  180
SETDEVERMW WESLLDDKEI NLTNNSSCLG SGSAVNQDPI KSLFVEDNAA GGIMIGDVFC  240
EQGQSSWAGI SFDANLRNQI VTEIYRQGPE GL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C1e-2291154105C-Myb DNA-Binding Domain
1msf_C1e-2291154105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00213DAPTransfer from AT1G66370Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.017G125700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024444016.10.0transcription factor MYB113
SwissprotQ9FNV92e-61MY113_ARATH; Transcription factor MYB113
TrEMBLU5GI570.0U5GI57_POPTR; Uncharacterized protein
STRINGPOPTR_0005s14480.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.18e-64myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]