PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.017G124000.1
Common NamePOPTR_0005s14660g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family M-type_MADS
Protein Properties Length: 305aa    MW: 33040.5 Da    PI: 4.0965
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.017G124000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF45.97.4e-151560649
                        HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-..TTSEEEEE CS
              SRF-TF  6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifs..stgklyey 49
                          +r+vtf+kRr+g++ KA  L+  Cda++a+++ s  s+ k+y++
  Potri.017G124000.1 15 AEQRSVTFTKRRQGLFNKAADLCRICDAQIAIMVSStgSKEKVYTF 60
                        568****************************999652278899998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.9E-18163IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.657262IPR002100Transcription factor, MADS-box
PRINTSPR004047.7E-9424IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.88E-18577IPR002100Transcription factor, MADS-box
PfamPF003193.4E-141560IPR002100Transcription factor, MADS-box
PRINTSPR004047.7E-92439IPR002100Transcription factor, MADS-box
PRINTSPR004047.7E-93960IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MGRTRKIPMA KRETAEQRSV TFTKRRQGLF NKAADLCRIC DAQIAIMVSS TGSKEKVYTF  60
GHSSIDAVFD RFLDNFTAAP EAVAYEAGIK SASNSLYEEI KALEGDVNTL MQNKKRNVGG  120
VLWDSLEEIE QSSTSVEELQ DVVDILESLL GQAKNKLMNN ATENLGISIA VEPKSDDFLA  180
LEPKPRDDSS SSLGGDQIGQ NSAIIGDNGA NYSDSYWNAD GSTTDSGMEF PVEVDLDLIW  240
NLLESSDFSS CSDKVISINN SSDCTTSGTA SESASGYCLT DQLGLPLLTA GANQFEDWTN  300
YYQC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.017G124000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006383341.20.0MADS-box protein SOC1
TrEMBLU5GC820.0U5GC82_POPTR; Uncharacterized protein
STRINGPOPTR_0005s14660.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14582714
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.13e-19AGAMOUS-like 62