PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.017G120000.3
Common NamePOPTR_0005s15090g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NF-YC
Protein Properties Length: 204aa    MW: 23464 Da    PI: 5.3579
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.017G120000.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC1283.4e-40641672101
               NF-YC   2 lksfwekq...iekatdfk.nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdi 88 
                         l  fw++q   i ++t  k n+ lPlarik+++k+d dvkmisae+P+l+skacelfileltlrswl++ ++krrtl+++di+ ++ + d+
  Potri.017G120000.3  64 LDEFWNQQlleIYNTTASKsNNMLPLARIKRVMKSDGDVKMISAETPILFSKACELFILELTLRSWLQTASCKRRTLQRCDISRVIRQEDM 154
                         779*****877445555555999******************************************************************** PP

               NF-YC  89 fdflvdivprdel 101
                          +fl  +vp d++
  Potri.017G120000.3 155 LNFLNRVVPCDHK 167
                         ********99865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471132.01E-2458158IPR009072Histone-fold
PfamPF008082.8E-1587148IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.2E-2987163IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MDLNQSIELD LASADPSPQE VENALPMNSS MLPYHQTTKE LVRVFSYANR SLFSYPLKQH  60
KQNLDEFWNQ QLLEIYNTTA SKSNNMLPLA RIKRVMKSDG DVKMISAETP ILFSKACELF  120
ILELTLRSWL QTASCKRRTL QRCDISRVIR QEDMLNFLNR VVPCDHKKED EVTKCTEEME  180
SLPNMQMPAF PFLDLNGVSD IVQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B7e-3071163394NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of flowering time under long day (LD) conditions. Functions as repressor of flowering, independently of HD1 and GHD7. Controls flowering time by negatively regulating the expression of EHD1 and HD3A (PubMed:26542958). Component of the NF-Y/HAP transcription factor complex (By similarity). {ECO:0000250, ECO:0000269|PubMed:26542958}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.017G120000.3
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation under long day (LD) conditions. Expression increases in the middle of daytime, peaks around the end of the light period and gradually decreases during the dark period and beginning of daylight. {ECO:0000269|PubMed:26542958}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2090421e-106AC209042.1 Populus trichocarpa clone POP052-O09, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024444106.11e-127nuclear transcription factor Y subunit C-2
SwissprotQ655V52e-36NFYC4_ORYSJ; Nuclear transcription factor Y subunit C-4
TrEMBLA0A2K1X6V11e-126A0A2K1X6V1_POPTR; Uncharacterized protein
STRINGPOPTR_0005s15090.11e-110(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.27e-38nuclear factor Y, subunit C2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Kim SK, et al.
    OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice.
    Planta, 2016. 243(3): p. 563-76
    [PMID:26542958]