PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Potri.017G120000.3 | ||||||||
Common Name | POPTR_0005s15090g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
||||||||
Family | NF-YC | ||||||||
Protein Properties | Length: 204aa MW: 23464 Da PI: 5.3579 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 128 | 3.4e-40 | 64 | 167 | 2 | 101 |
NF-YC 2 lksfwekq...iekatdfk.nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdi 88 l fw++q i ++t k n+ lPlarik+++k+d dvkmisae+P+l+skacelfileltlrswl++ ++krrtl+++di+ ++ + d+ Potri.017G120000.3 64 LDEFWNQQlleIYNTTASKsNNMLPLARIKRVMKSDGDVKMISAETPILFSKACELFILELTLRSWLQTASCKRRTLQRCDISRVIRQEDM 154 779*****877445555555999******************************************************************** PP NF-YC 89 fdflvdivprdel 101 +fl +vp d++ Potri.017G120000.3 155 LNFLNRVVPCDHK 167 ********99865 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 2.01E-24 | 58 | 158 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.8E-15 | 87 | 148 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 1.2E-29 | 87 | 163 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 204 aa Download sequence Send to blast |
MDLNQSIELD LASADPSPQE VENALPMNSS MLPYHQTTKE LVRVFSYANR SLFSYPLKQH 60 KQNLDEFWNQ QLLEIYNTTA SKSNNMLPLA RIKRVMKSDG DVKMISAETP ILFSKACELF 120 ILELTLRSWL QTASCKRRTL QRCDISRVIR QEDMLNFLNR VVPCDHKKED EVTKCTEEME 180 SLPNMQMPAF PFLDLNGVSD IVQ* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 7e-30 | 71 | 163 | 3 | 94 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of flowering time under long day (LD) conditions. Functions as repressor of flowering, independently of HD1 and GHD7. Controls flowering time by negatively regulating the expression of EHD1 and HD3A (PubMed:26542958). Component of the NF-Y/HAP transcription factor complex (By similarity). {ECO:0000250, ECO:0000269|PubMed:26542958}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Potri.017G120000.3 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Circadian-regulation under long day (LD) conditions. Expression increases in the middle of daytime, peaks around the end of the light period and gradually decreases during the dark period and beginning of daylight. {ECO:0000269|PubMed:26542958}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC209042 | 1e-106 | AC209042.1 Populus trichocarpa clone POP052-O09, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024444106.1 | 1e-127 | nuclear transcription factor Y subunit C-2 | ||||
Swissprot | Q655V5 | 2e-36 | NFYC4_ORYSJ; Nuclear transcription factor Y subunit C-4 | ||||
TrEMBL | A0A2K1X6V1 | 1e-126 | A0A2K1X6V1_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0005s15090.1 | 1e-110 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G56170.2 | 7e-38 | nuclear factor Y, subunit C2 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Potri.017G120000.3 |
Entrez Gene | 18099441 |
Publications ? help Back to Top | |||
---|---|---|---|
|