PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.017G120000.2 | ||||||||
Common Name | POPTR_0005s15090g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | NF-YC | ||||||||
Protein Properties | Length: 217aa MW: 24799.3 Da PI: 4.5948 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 127.7 | 4e-40 | 47 | 150 | 2 | 101 |
NF-YC 2 lksfwekq...iekatdfk.nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdi 88 l fw++q i ++t k n+ lPlarik+++k+d dvkmisae+P+l+skacelfileltlrswl++ ++krrtl+++di+ ++ + d+ Potri.017G120000.2 47 LDEFWNQQlleIYNTTASKsNNMLPLARIKRVMKSDGDVKMISAETPILFSKACELFILELTLRSWLQTASCKRRTLQRCDISRVIRQEDM 137 779*****877445555555999******************************************************************** PP NF-YC 89 fdflvdivprdel 101 +fl +vp d++ Potri.017G120000.2 138 LNFLNRVVPCDHK 150 ********99865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 4.19E-25 | 13 | 141 | IPR009072 | Histone-fold |
Pfam | PF00808 | 3.2E-15 | 70 | 131 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 1.3E-29 | 70 | 146 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MDLNQSIELD LASADPSPQE VENALPMNSS MLPYHQTTKE LQHKQNLDEF WNQQLLEIYN 60 TTASKSNNML PLARIKRVMK SDGDVKMISA ETPILFSKAC ELFILELTLR SWLQTASCKR 120 RTLQRCDISR VIRQEDMLNF LNRVVPCDHK KEDEVTKCTE EMESLPNMQM PAFPFLDLNG 180 EVMMDENSHE DPQELMIKPP MPSSDFTSGS ASKWAN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 2e-29 | 54 | 146 | 3 | 94 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.017G120000.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC209042 | 1e-106 | AC209042.1 Populus trichocarpa clone POP052-O09, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024444106.1 | 1e-160 | nuclear transcription factor Y subunit C-2 | ||||
TrEMBL | A0A2K1X6V1 | 1e-159 | A0A2K1X6V1_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0005s15090.1 | 1e-110 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56170.2 | 2e-37 | nuclear factor Y, subunit C2 |
Link Out ? help Back to Top | |
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Phytozome | Potri.017G120000.2 |
Entrez Gene | 18099441 |