PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Potri.017G107500.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
||||||||
Family | CO-like | ||||||||
Protein Properties | Length: 421aa MW: 46268.7 Da PI: 5.2051 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 17.2 | 1.1e-05 | 70 | 112 | 4 | 40 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 r+C+++ + +C+ ++ +lC+ C H H++v Potri.017G107500.2 70 RVCDTCRAAACTVYCRADSAYLCAGCDARVHAAnrvasrHERV 112 79******99******************999556677778766 PP | |||||||
2 | zf-B_box | 28.1 | 4.2e-09 | 112 | 157 | 3 | 42 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 r+C+ +e+ ++ l C+ + lC C +H+ H++vp+ Potri.017G107500.2 112 VRVCEACERAPAALLCKADAASLCTACDADIHSAnplarrHQRVPI 157 689*****************************66899999**9997 PP | |||||||
3 | CCT | 68.3 | 2.1e-23 | 351 | 394 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eK+k RkFeK+irY+sRKa+Ae+RpR+KGrF+k++ Potri.017G107500.2 351 REARVLRYREKKKARKFEKTIRYASRKAYAETRPRIKGRFAKRT 394 9*****************************************87 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 7.6E-8 | 67 | 114 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.736 | 67 | 114 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 9.08E-8 | 70 | 114 | No hit | No description |
PROSITE profile | PS50119 | 11.633 | 110 | 157 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 3.5E-7 | 112 | 157 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.19E-9 | 113 | 157 | No hit | No description |
SMART | SM00336 | 3.8E-10 | 115 | 157 | IPR000315 | B-box-type zinc finger |
Pfam | PF06203 | 2.9E-17 | 351 | 393 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 16.569 | 351 | 393 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009658 | Biological Process | chloroplast organization | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0048576 | Biological Process | positive regulation of short-day photoperiodism, flowering | ||||
GO:0048579 | Biological Process | negative regulation of long-day photoperiodism, flowering | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 421 aa Download sequence Send to blast |
MPRVTSLILS SPLVFFLQVS LILATNAHSL SYIAKDSITE IGIGREREEV MLKEESGGSG 60 SGGVVNNWAR VCDTCRAAAC TVYCRADSAY LCAGCDARVH AANRVASRHE RVRVCEACER 120 APAALLCKAD AASLCTACDA DIHSANPLAR RHQRVPILPI SGYLYGTQVG PAAGETEDQF 180 MTQEGEETIG EEDEDEAASW LLLNPAKNSN NQNNNGFLFG GEVDEYLDIV EYNSCAENQY 240 SDQYNQQHYS VPPKSCGGDS VVPIQYGEGK DHQQQQQQQH HNFQLGLEYE PAKAAYSYDG 300 SVSMSSMDVG VVPESAMSEI SISHQSAPRG TIDLFSSPPI QMPSQLSPME REARVLRYRE 360 KKKARKFEKT IRYASRKAYA ETRPRIKGRF AKRTDVDVEV DQMFSSTLMA ETAYGIVPSF 420 * |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Pth.12828 | 0.0 | bud| leaf |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed throughout development. | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed in leaves. Expressed at lower levels in stems, flowers and siliques. Not detected in roots. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Putative transcription factor. Does not affect flowering time. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Potri.017G107500.2 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Expressed with a circadian rhythm showing a peak at dawn. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AY515150 | 0.0 | AY515150.1 Populus deltoides CONSTANS-like protein CO1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006373513.2 | 0.0 | zinc finger protein CONSTANS-LIKE 2 | ||||
Swissprot | Q96502 | 1e-148 | COL2_ARATH; Zinc finger protein CONSTANS-LIKE 2 | ||||
TrEMBL | Q6R3R2 | 0.0 | Q6R3R2_POPDE; CONSTANS-like protein CO1 | ||||
STRING | POPTR_0017s14410.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G02380.1 | 1e-111 | CONSTANS-like 2 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Potri.017G107500.2 |
Publications ? help Back to Top | |||
---|---|---|---|
|