PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Potri.017G104800.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 238aa MW: 26248.9 Da PI: 7.9527 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.2 | 2.2e-30 | 91 | 149 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++W+KYGqK++kgs++pr+YYrC+s+ gC +kk+vers++dp++++itY++eHnh+ Potri.017G104800.1 91 SDLWAWKKYGQKHIKGSPYPRGYYRCSSTkGCLAKKHVERSRNDPNMLVITYNSEHNHP 149 699************************998****************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.8E-30 | 84 | 151 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.743 | 85 | 151 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.45E-26 | 88 | 151 | IPR003657 | WRKY domain |
SMART | SM00774 | 7.0E-36 | 90 | 150 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.3E-25 | 92 | 149 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 238 aa Download sequence Send to blast |
MRSDTVFPVS CDVEQSKIND QTESYTIVFD KIGKNLRENE EKVQRWMDIL SEVEISSGSR 60 SAERKSQAKK VVCIPAPAAA NSRSSGEVVP SDLWAWKKYG QKHIKGSPYP RGYYRCSSTK 120 GCLAKKHVER SRNDPNMLVI TYNSEHNHPW PTQRNALAGS TRSQPTKSNA ASKSSTGAQA 180 RKTANTKEDQ KESSNDTLSP TDIIGGSSTA SASVKEESDD IEKQMEMDDN EFSEGFS* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 5e-25 | 66 | 152 | 3 | 80 | Disease resistance protein RRS1 |
5w3x_D | 5e-25 | 66 | 152 | 3 | 80 | Disease resistance protein RRS1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Potri.017G104800.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KJ569571 | 0.0 | KJ569571.1 Populus trichocarpa WRKY66 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011011972.1 | 1e-150 | PREDICTED: WRKY transcription factor 6-like isoform X3 | ||||
Swissprot | O64747 | 8e-64 | WRK35_ARATH; Probable WRKY transcription factor 35 | ||||
TrEMBL | A0A060AFA1 | 1e-176 | A0A060AFA1_POPTR; WRKY66 | ||||
STRING | POPTR_0011s16050.1 | 1e-114 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5430 | 34 | 54 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G34830.1 | 3e-66 | WRKY DNA-binding protein 35 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Potri.017G104800.1 |
Publications ? help Back to Top | |||
---|---|---|---|
|