PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.017G101700.2
Common NamePOPTR_0017s13610g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 333aa    MW: 36780.7 Da    PI: 5.8926
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.017G101700.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.71.6e-164392255
                        HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                        r  h+e E+rRR++iN++f+ Lr l+P++    ++K +Ka+ L +++eY++ Lq
  Potri.017G101700.2 43 RSRHSETEQRRRSKINERFQALRNLVPQN----DQKRDKASFLLEVIEYVQFLQ 92
                        889*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.2E-1940111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-2240112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.0534191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.92E-154396No hitNo description
PfamPF000104.7E-144392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.8E-134797IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MVKSTKSHLD EEDEAEDYDS SSYKGEAEKA ESKSNELKAN ANRSRHSETE QRRRSKINER  60
FQALRNLVPQ NDQKRDKASF LLEVIEYVQF LQAKLQIYEG SYEGWSQEPA KLLPRKNYRA  120
SAESILGHTQ VMKNGSAHEN TVMLGNVHNS IKSDMDTAAM YKTLDHSPGP TNPAIPFEVR  180
TQSRVFAAVG RGGVPTESLQ ESVSDAENMA YQLQSQLLHG QPCATECITP NNTLNGQEDV  240
ASDSQSVNIS NTYSKQILNS LTQALLSSGV DIAQTSITVQ IDVGKRENGT TAVAPSSMVN  300
QYLSNQLIIQ DGVGSSVEDL NQAHKRQRRE KC*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.45180.0bud
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.017G101700.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024444953.10.0transcription factor BIM2 isoform X2
TrEMBLA0A3N7H6350.0A0A3N7H635_POPTR; Uncharacterized protein
STRINGPOPTR_0017s13610.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.12e-55BES1-interacting Myc-like protein 2