PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.017G099700.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MIKC_MADS
Protein Properties Length: 245aa    MW: 28030.9 Da    PI: 8.8493
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.017G099700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF95.32.8e-30959151
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        krienk+nrqvtf+kRrng+lKKA+ELSvLC+aeva+iifs++gkl+e++s
  Potri.017G099700.1  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCEAEVALIIFSNRGKLFEFCS 59
                        79***********************************************96 PP
2K-box94.22.2e-31811738100
               K-box   8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                         ++ +++ es+++e+ k+k++ e+Lqr+qR+llGedL++L+ keL+qLe++Le+slk++Rs+K++++l+q+ +lq+ke++l e+n+aL+ kl
  Potri.017G099700.1  81 NKPAKELESSYREYLKVKAKFETLQRTQRNLLGEDLGPLNTKELEQLERHLESSLKQVRSTKTQYMLDQLGDLQNKEHMLLEANRALTIKL 171
                         45678899*******************************************************************************9998 PP

               K-box  99 ee 100
                         +e
  Potri.017G099700.1 172 DE 173
                         76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.2E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.66161IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.03E-33277IPR002100Transcription factor, MADS-box
CDDcd002651.89E-43278No hitNo description
PRINTSPR004048.0E-32323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003194.5E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004048.0E-322338IPR002100Transcription factor, MADS-box
PRINTSPR004048.0E-323859IPR002100Transcription factor, MADS-box
PfamPF014864.7E-2685171IPR002487Transcription factor, K-box
PROSITE profilePS5129714.78987177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCE AEVALIIFSN RGKLFEFCST  60
SNMLKTLERY QKCSYGAEEV NKPAKELESS YREYLKVKAK FETLQRTQRN LLGEDLGPLN  120
TKELEQLERH LESSLKQVRS TKTQYMLDQL GDLQNKEHML LEANRALTIK LDEISARNNL  180
RPSWEGDDQQ SMSYGHQHAQ SQGLFQHLEC NPTLQIGYNS VGSDQIAATH AAQQVHGFIP  240
GWML*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A2e-35751711101Developmental protein SEPALLATA 3
4ox0_B2e-35751711101Developmental protein SEPALLATA 3
4ox0_C2e-35751711101Developmental protein SEPALLATA 3
4ox0_D2e-35751711101Developmental protein SEPALLATA 3
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.34950.0bud
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers and seeds. {ECO:0000269|Ref.1}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.017G099700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ7893980.0DQ789398.1 Populus tomentosa MADS4 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006373395.20.0developmental protein SEPALLATA 2
RefseqXP_024444692.10.0developmental protein SEPALLATA 2
SwissprotQ8LLR21e-145MADS2_VITVI; Agamous-like MADS-box protein MADS2
TrEMBLA0A2K1X5T50.0A0A2K1X5T5_POPTR; Uncharacterized protein
STRINGevm.model.supercontig_14.2221e-153(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22932178
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02310.11e-133MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]