PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.017G094800.1
Common NamePOPTR_0017s13050g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family TCP
Protein Properties Length: 334aa    MW: 36860.3 Da    PI: 7.7432
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.017G094800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP101.81.2e-3148171289
                 TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssas.....nsss 87 
                          g+kdrhsk++T +g+RdRRvRls+ +a++++dLqd+LG+ ++sk ++WLl++ak+ i+el+ +++++ +++ +++    +s     +   
  Potri.017G094800.1  48 FGGKDRHSKVCTIRGLRDRRVRLSVATAIQLYDLQDRLGLNQPSKVVDWLLNAAKHDIDELPPLPAIPGNFSLNHQAMLGSSrelgaS--- 135
                         689*************************************************************999998883333333333112211... PP

                 TCP  88 g..................................k 89 
                         +                                  +
  Potri.017G094800.1 136 QsgnsinwedpsafprpnlwnadafwrakskevvmD 171
                         022234466665555555555555555444444441 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136930.83450108IPR017887Transcription factor TCP subgroup
PfamPF036345.5E-3050187IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MITSSKEVDC PPKKEDDTND GKISKASSSS APWLRLKDPR IVRVSRAFGG KDRHSKVCTI  60
RGLRDRRVRL SVATAIQLYD LQDRLGLNQP SKVVDWLLNA AKHDIDELPP LPAIPGNFSL  120
NHQAMLGSSR ELGASQSGNS INWEDPSAFP RPNLWNADAF WRAKSKEVVM DPVNEKENWT  180
KRIEEDKQDS NIEGNSTAQV SSSSFLHRAS HSSLPSLINN AMPYGSFFHL EPPNFPLSQM  240
GNHGFSTQTG DIHNLNAVPL SSALSLSSGS QFFVCPPGTT QSYFPSHVTA SMENDPRQIN  300
HFQVLTPSTQ NLFPNSLTPS PYHTVFPMVL SQL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-1855109155Putative transcription factor PCF6
5zkt_B1e-1855109155Putative transcription factor PCF6
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.017G094800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024444582.10.0transcription factor TCP13
RefseqXP_024444583.10.0transcription factor TCP13
TrEMBLB9IK870.0B9IK87_POPTR; Uncharacterized protein
STRINGPOPTR_0017s13050.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93234119
Representative plantOGRP18015163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.19e-49plastid transcription factor 1