PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.017G091900.2

Common Name

POPTR_0017s12750g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

MYB_related

Protein Properties

Length: 468aa MW: 52036.5 Da PI: 4.1042

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.017G091900.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.4	1.3e-07	256	304	2	47
SSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47 ++WT eE++ + ++v + W+ ++t++ Rt k+++s+++++ Potri.017G091900.2 256 NKWTDEEEQAFHEVVLSNPVSlgknFWDHLSATFP-SRTKKELVSYYFNV 304 58***********8644444444******.*********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.0E-4	252	313	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.34E-5	254	305	IPR009057	Homeodomain-like
PROSITE profile	PS50090	6.342	256	305	IPR017877	Myb-like domain
CDD	cd00167	2.51E-6	257	305	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 468 aa Download sequence Send to blast
MIHKRAFSDD NLYEFACKHP RQMEHIDQLA PIFPLDSGHQ KHLVSGDDSF RKCQEVGRSA 60 SDLFSECSNG TSKGFETGDN GCFPHFLWIG NGILEADNLS FFPEYFDHGH QLRALLEPEE 120 ACSSLDYPFQ KQVSVGPEHQ AYVPEWDSQG SSTSLNQLDD SNLQVACAHS SSPGVIIDGG 180 YEENLMGTCI LPMPDLEASA NYCYEATNHD CACPDAGSIR CIKQHVSEAR LKLRENLGEE 240 IFEGLGFCDM GEVVANKWTD EEEQAFHEVV LSNPVSLGKN FWDHLSATFP SRTKKELVSY 300 YFNVFMLQKR AEQNRFDPLN IDSDDDEWQK IEGETVEEDE DSVVESLTGQ DSSAYCQEDH 360 AEKFNEYVED EDEAVASKDG VDNVVRGIAT DAEYEGDVDD FSGAHVGIYH GCVGDLGPKH 420 FNGIAGTNTD DCDVQDDSCT SYEHHRDSID CYGPLDMGTD GRHSSQE*

Sequence ? help Back to Top

Protein Sequence Length: 468 aa Download sequence Send to blast

MIHKRAFSDD NLYEFACKHP RQMEHIDQLA PIFPLDSGHQ KHLVSGDDSF RKCQEVGRSA  60
SDLFSECSNG TSKGFETGDN GCFPHFLWIG NGILEADNLS FFPEYFDHGH QLRALLEPEE  120
ACSSLDYPFQ KQVSVGPEHQ AYVPEWDSQG SSTSLNQLDD SNLQVACAHS SSPGVIIDGG  180
YEENLMGTCI LPMPDLEASA NYCYEATNHD CACPDAGSIR CIKQHVSEAR LKLRENLGEE  240
IFEGLGFCDM GEVVANKWTD EEEQAFHEVV LSNPVSLGKN FWDHLSATFP SRTKKELVSY  300
YFNVFMLQKR AEQNRFDPLN IDSDDDEWQK IEGETVEEDE DSVVESLTGQ DSSAYCQEDH  360
AEKFNEYVED EDEAVASKDG VDNVVRGIAT DAEYEGDVDD FSGAHVGIYH GCVGDLGPKH  420
FNGIAGTNTD DCDVQDDSCT SYEHHRDSID CYGPLDMGTD GRHSSQE*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.017G091900.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002324102.2	0.0	uncharacterized protein LOC7467885
TrEMBL	B9IK58	0.0	B9IK58_POPTR; Uncharacterized protein
STRING	POPTR_0017s12750.1	0.0	(Populus trichocarpa)

Link Out ? help Back to Top
Phytozome	Potri.017G091900.2
Entrez Gene	7467885